miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2380 3' -60.9 NC_001416.1 + 14878 1.1 0.000183
Target:  5'- cAUCCGGGCACUGGCCACACAGCUCCCg -3'
miRNA:   3'- -UAGGCCCGUGACCGGUGUGUCGAGGG- -5'
2380 3' -60.9 NC_001416.1 + 4938 0.73 0.12879
Target:  5'- cUCCcGGCGuCUGGUCACGCAGaccgCCCg -3'
miRNA:   3'- uAGGcCCGU-GACCGGUGUGUCga--GGG- -5'
2380 3' -60.9 NC_001416.1 + 16479 0.71 0.175406
Target:  5'- cGUCCGGcacugacuggucgcaGUACUGGCCGaugacaUACAGCgCCCa -3'
miRNA:   3'- -UAGGCC---------------CGUGACCGGU------GUGUCGaGGG- -5'
2380 3' -60.9 NC_001416.1 + 45828 0.7 0.198153
Target:  5'- -gCCGGGCGCUGGUUAUgguCAGUUCg- -3'
miRNA:   3'- uaGGCCCGUGACCGGUGu--GUCGAGgg -5'
2380 3' -60.9 NC_001416.1 + 14304 0.68 0.250123
Target:  5'- -aUUGuGGCGCUGGUC-CACAGCcacCCCg -3'
miRNA:   3'- uaGGC-CCGUGACCGGuGUGUCGa--GGG- -5'
2380 3' -60.9 NC_001416.1 + 10677 0.68 0.276622
Target:  5'- -gCCGacaGGCGCUGGCUGCACAGaaagcggggaUUUCCg -3'
miRNA:   3'- uaGGC---CCGUGACCGGUGUGUC----------GAGGG- -5'
2380 3' -60.9 NC_001416.1 + 2268 0.67 0.305317
Target:  5'- --aCGuGGCauGCUGGCCAC-CGGCUUUCc -3'
miRNA:   3'- uagGC-CCG--UGACCGGUGuGUCGAGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.