Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2380 | 3' | -60.9 | NC_001416.1 | + | 2268 | 0.67 | 0.305317 |
Target: 5'- --aCGuGGCauGCUGGCCAC-CGGCUUUCc -3' miRNA: 3'- uagGC-CCG--UGACCGGUGuGUCGAGGG- -5' |
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2380 | 3' | -60.9 | NC_001416.1 | + | 4938 | 0.73 | 0.12879 |
Target: 5'- cUCCcGGCGuCUGGUCACGCAGaccgCCCg -3' miRNA: 3'- uAGGcCCGU-GACCGGUGUGUCga--GGG- -5' |
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2380 | 3' | -60.9 | NC_001416.1 | + | 10677 | 0.68 | 0.276622 |
Target: 5'- -gCCGacaGGCGCUGGCUGCACAGaaagcggggaUUUCCg -3' miRNA: 3'- uaGGC---CCGUGACCGGUGUGUC----------GAGGG- -5' |
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2380 | 3' | -60.9 | NC_001416.1 | + | 14304 | 0.68 | 0.250123 |
Target: 5'- -aUUGuGGCGCUGGUC-CACAGCcacCCCg -3' miRNA: 3'- uaGGC-CCGUGACCGGuGUGUCGa--GGG- -5' |
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2380 | 3' | -60.9 | NC_001416.1 | + | 14878 | 1.1 | 0.000183 |
Target: 5'- cAUCCGGGCACUGGCCACACAGCUCCCg -3' miRNA: 3'- -UAGGCCCGUGACCGGUGUGUCGAGGG- -5' |
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2380 | 3' | -60.9 | NC_001416.1 | + | 16479 | 0.71 | 0.175406 |
Target: 5'- cGUCCGGcacugacuggucgcaGUACUGGCCGaugacaUACAGCgCCCa -3' miRNA: 3'- -UAGGCC---------------CGUGACCGGU------GUGUCGaGGG- -5' |
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2380 | 3' | -60.9 | NC_001416.1 | + | 45828 | 0.7 | 0.198153 |
Target: 5'- -gCCGGGCGCUGGUUAUgguCAGUUCg- -3' miRNA: 3'- uaGGCCCGUGACCGGUGu--GUCGAGgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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