miRNA display CGI


Results 21 - 40 of 587 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23800 3' -64.6 NC_005261.1 + 21381 0.66 0.517142
Target:  5'- -cGCCGgaGGCGCGGUCcacuuuGAGUGCGu -3'
miRNA:   3'- ccCGGCg-CCGCGCCGGcuu---CUCGCGU- -5'
23800 3' -64.6 NC_005261.1 + 17568 0.66 0.517142
Target:  5'- cGGCgGUGGCcuuGCGGgCGAgcuGGcaAGCGCAg -3'
miRNA:   3'- cCCGgCGCCG---CGCCgGCU---UC--UCGCGU- -5'
23800 3' -64.6 NC_005261.1 + 74463 0.66 0.517142
Target:  5'- gGGcGCCGCccccGGCGCGGCgUGccuGGGCGgGa -3'
miRNA:   3'- -CC-CGGCG----CCGCGCCG-GCuu-CUCGCgU- -5'
23800 3' -64.6 NC_005261.1 + 126695 0.66 0.516214
Target:  5'- aGGCCgGCGGUgcgggaaGCGGCUGGuucgcGuGCGCGu -3'
miRNA:   3'- cCCGG-CGCCG-------CGCCGGCUu----CuCGCGU- -5'
23800 3' -64.6 NC_005261.1 + 38167 0.66 0.515287
Target:  5'- cGGCCGCaGCaCGGCUGccuggaggccuGGGCGCGc -3'
miRNA:   3'- cCCGGCGcCGcGCCGGCuu---------CUCGCGU- -5'
23800 3' -64.6 NC_005261.1 + 28286 0.66 0.51436
Target:  5'- -cGCCGCGGcCGCGGUCGucuccuucguucgcGGCGCc -3'
miRNA:   3'- ccCGGCGCC-GCGCCGGCuuc-----------UCGCGu -5'
23800 3' -64.6 NC_005261.1 + 80665 0.66 0.511584
Target:  5'- -uGCuCGCGGUGCGcGCCGucgcggagcccguagAAGGGCGaCAu -3'
miRNA:   3'- ccCG-GCGCCGCGC-CGGC---------------UUCUCGC-GU- -5'
23800 3' -64.6 NC_005261.1 + 113545 0.66 0.507892
Target:  5'- gGGGCCGUGcGCGCG-CUGGAccgcGAGCa-- -3'
miRNA:   3'- -CCCGGCGC-CGCGCcGGCUU----CUCGcgu -5'
23800 3' -64.6 NC_005261.1 + 124754 0.66 0.507892
Target:  5'- -aGCCGCaGCGgccgccuccaGGCUGAGGAGCGgGg -3'
miRNA:   3'- ccCGGCGcCGCg---------CCGGCUUCUCGCgU- -5'
23800 3' -64.6 NC_005261.1 + 83127 0.66 0.507892
Target:  5'- -aGCCGCGcGCGCGGCaCGcccugcAGGuGCgGCAg -3'
miRNA:   3'- ccCGGCGC-CGCGCCG-GC------UUCuCG-CGU- -5'
23800 3' -64.6 NC_005261.1 + 46573 0.66 0.507892
Target:  5'- -uGCUGCGaGCGCGGCCuc---GCGCGa -3'
miRNA:   3'- ccCGGCGC-CGCGCCGGcuucuCGCGU- -5'
23800 3' -64.6 NC_005261.1 + 60203 0.66 0.507892
Target:  5'- -aGuCCGCGcGCGCGcucccGCCGcGGGGCGCc -3'
miRNA:   3'- ccC-GGCGC-CGCGC-----CGGCuUCUCGCGu -5'
23800 3' -64.6 NC_005261.1 + 133100 0.66 0.507892
Target:  5'- aGGCCGCcgucaaccGCGCGGCCuuccacGgcGuGCGCGu -3'
miRNA:   3'- cCCGGCGc-------CGCGCCGG------CuuCuCGCGU- -5'
23800 3' -64.6 NC_005261.1 + 59449 0.66 0.507892
Target:  5'- cGGCaGCaGCGCGGCCGc--GGCGUc -3'
miRNA:   3'- cCCGgCGcCGCGCCGGCuucUCGCGu -5'
23800 3' -64.6 NC_005261.1 + 1782 0.66 0.507892
Target:  5'- uGGcGCCGCGGCagagccgcagcgGCGGCgcccCGggGuagagccGCGCGu -3'
miRNA:   3'- -CC-CGGCGCCG------------CGCCG----GCuuCu------CGCGU- -5'
23800 3' -64.6 NC_005261.1 + 3919 0.66 0.506971
Target:  5'- -cGCCGcCGGCGCcggccuccggguaGGCCau-GGGCGCGu -3'
miRNA:   3'- ccCGGC-GCCGCG-------------CCGGcuuCUCGCGU- -5'
23800 3' -64.6 NC_005261.1 + 46111 0.66 0.505131
Target:  5'- gGGGCCGUGGUccGCGuccagcaggucgccGcCCGAGaacgccGAGCGCGg -3'
miRNA:   3'- -CCCGGCGCCG--CGC--------------C-GGCUU------CUCGCGU- -5'
23800 3' -64.6 NC_005261.1 + 97253 0.66 0.498713
Target:  5'- uGGGUCGCGGgGuCGGgUGgcGGGaCGUAc -3'
miRNA:   3'- -CCCGGCGCCgC-GCCgGCuuCUC-GCGU- -5'
23800 3' -64.6 NC_005261.1 + 62813 0.66 0.498713
Target:  5'- uGGGCCauaucgccgcGCGGgGCaccGGCgGggGAcugGCGCGc -3'
miRNA:   3'- -CCCGG----------CGCCgCG---CCGgCuuCU---CGCGU- -5'
23800 3' -64.6 NC_005261.1 + 24396 0.66 0.498713
Target:  5'- cGGCgGCGGgGCGGuCCuGGGGGCuCGg -3'
miRNA:   3'- cCCGgCGCCgCGCC-GGcUUCUCGcGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.