miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23800 5' -55.1 NC_005261.1 + 138134 0.68 0.863507
Target:  5'- cGCgACGGCCggCGggauGGCGCGggGAgGAg -3'
miRNA:   3'- -CGgUGUCGGaaGC----CCGCGCuaUUgCU- -5'
23800 5' -55.1 NC_005261.1 + 138019 0.7 0.719485
Target:  5'- cCCGCAGCCcggCGcGGCccggcgGCGGUGGCGGc -3'
miRNA:   3'- cGGUGUCGGaa-GC-CCG------CGCUAUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 136462 0.66 0.933572
Target:  5'- cGCgGCAGCCccagacUCGcGCGCGGgcagcAGCGAg -3'
miRNA:   3'- -CGgUGUCGGa-----AGCcCGCGCUa----UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 135644 0.66 0.911409
Target:  5'- cGCUGCuaCCUgcgCGGGCGCGG--GCGGc -3'
miRNA:   3'- -CGGUGucGGAa--GCCCGCGCUauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 135241 0.76 0.421754
Target:  5'- cGCCGCcGUCUuugCGGGCGCGcgGAUGGa -3'
miRNA:   3'- -CGGUGuCGGAa--GCCCGCGCuaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 135088 0.69 0.796288
Target:  5'- gGCuCGCGGCCcggcggCGGaGCGCGA-GGCGGa -3'
miRNA:   3'- -CG-GUGUCGGaa----GCC-CGCGCUaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 134572 0.71 0.668699
Target:  5'- cGCCGCGGCUgcgcaGGGCGgGccUGGCGAg -3'
miRNA:   3'- -CGGUGUCGGaag--CCCGCgCu-AUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 134524 0.71 0.699334
Target:  5'- cGCCuGCAGCUgcUGGGCGCGcaGACGu -3'
miRNA:   3'- -CGG-UGUCGGaaGCCCGCGCuaUUGCu -5'
23800 5' -55.1 NC_005261.1 + 133382 0.68 0.855775
Target:  5'- uGCgCGCGGCCcaCGGGCGCGcgGc--- -3'
miRNA:   3'- -CG-GUGUCGGaaGCCCGCGCuaUugcu -5'
23800 5' -55.1 NC_005261.1 + 132655 0.69 0.777808
Target:  5'- gGCCcuaGCGGCCgcgugUGGGUGCGAgGACa- -3'
miRNA:   3'- -CGG---UGUCGGaa---GCCCGCGCUaUUGcu -5'
23800 5' -55.1 NC_005261.1 + 131984 0.66 0.922976
Target:  5'- gGCCACcaGGCCUUCGcaguCGCGGacGGCGAc -3'
miRNA:   3'- -CGGUG--UCGGAAGCcc--GCGCUa-UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 131452 0.68 0.866541
Target:  5'- cGCCGC-GCCUcgCGGGCGCcucccgccuccGCGAg -3'
miRNA:   3'- -CGGUGuCGGAa-GCCCGCGcuau-------UGCU- -5'
23800 5' -55.1 NC_005261.1 + 128065 0.73 0.565877
Target:  5'- gGCCAUGGCgggCGGGCGgGcgAGCGAg -3'
miRNA:   3'- -CGGUGUCGgaaGCCCGCgCuaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 127807 0.67 0.878331
Target:  5'- cGCCGCGGCgg-CGGGCcgcucgcgcucGCGGccGCGAg -3'
miRNA:   3'- -CGGUGUCGgaaGCCCG-----------CGCUauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 127760 0.71 0.709442
Target:  5'- gGCCGCGGC----GGGCGCGAaGACGc -3'
miRNA:   3'- -CGGUGUCGgaagCCCGCGCUaUUGCu -5'
23800 5' -55.1 NC_005261.1 + 127084 0.71 0.707426
Target:  5'- cGCCGCGccGCCgcaaugacggcUGGGCGCGGUGACc- -3'
miRNA:   3'- -CGGUGU--CGGaa---------GCCCGCGCUAUUGcu -5'
23800 5' -55.1 NC_005261.1 + 126944 0.74 0.535622
Target:  5'- gGCCAgGGgCgcCGGGCGCGggGGCGGc -3'
miRNA:   3'- -CGGUgUCgGaaGCCCGCGCuaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 126070 0.66 0.905264
Target:  5'- aGCCGCccgccGGCCUcggCGGGCGCGc------ -3'
miRNA:   3'- -CGGUG-----UCGGAa--GCCCGCGCuauugcu -5'
23800 5' -55.1 NC_005261.1 + 125471 0.71 0.678953
Target:  5'- cGCCGagaaAGCCg-CGGGCGCGAaAACu- -3'
miRNA:   3'- -CGGUg---UCGGaaGCCCGCGCUaUUGcu -5'
23800 5' -55.1 NC_005261.1 + 122382 0.68 0.855775
Target:  5'- aCCGCGGCCUggGGGCGCu------- -3'
miRNA:   3'- cGGUGUCGGAagCCCGCGcuauugcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.