miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23800 5' -55.1 NC_005261.1 + 84001 0.66 0.928396
Target:  5'- cCCGCGGCCcccggCGGGaUGCGcaaaGACGAc -3'
miRNA:   3'- cGGUGUCGGaa---GCCC-GCGCua--UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 126070 0.66 0.905264
Target:  5'- aGCCGCccgccGGCCUcggCGGGCGCGc------ -3'
miRNA:   3'- -CGGUG-----UCGGAa--GCCCGCGCuauugcu -5'
23800 5' -55.1 NC_005261.1 + 107909 0.66 0.933572
Target:  5'- gGCCGCGGCC-UCGGccacgagugccGCGCGGa----- -3'
miRNA:   3'- -CGGUGUCGGaAGCC-----------CGCGCUauugcu -5'
23800 5' -55.1 NC_005261.1 + 84676 0.66 0.9138
Target:  5'- cCCGCGGCCgcgcacacgaagcCGGcGCGCGGgcacGCGAg -3'
miRNA:   3'- cGGUGUCGGaa-----------GCC-CGCGCUau--UGCU- -5'
23800 5' -55.1 NC_005261.1 + 55922 0.66 0.917314
Target:  5'- aGCCGCAGCCgccgCcGGCGCGcagccguuUGGCu- -3'
miRNA:   3'- -CGGUGUCGGaa--GcCCGCGCu-------AUUGcu -5'
23800 5' -55.1 NC_005261.1 + 29885 0.66 0.905264
Target:  5'- uGCCGCcagcgcccgGGCCcgCGGcaGCGCGcgAGCGGc -3'
miRNA:   3'- -CGGUG---------UCGGaaGCC--CGCGCuaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 23497 0.66 0.911409
Target:  5'- cGCCugGGCaggcgCGGGCccugggagcacGCGGUcgGGCGAg -3'
miRNA:   3'- -CGGugUCGgaa--GCCCG-----------CGCUA--UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 13034 0.66 0.922976
Target:  5'- aCCACgAGCCa--GGGCGCGGggccGCGc -3'
miRNA:   3'- cGGUG-UCGGaagCCCGCGCUau--UGCu -5'
23800 5' -55.1 NC_005261.1 + 16800 0.66 0.928396
Target:  5'- cGCCAggaAGCCgUCccagaacggGGGCguGCGGUAGCGGc -3'
miRNA:   3'- -CGGUg--UCGGaAG---------CCCG--CGCUAUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 70167 0.66 0.905264
Target:  5'- --aACAGCagcaGGGCGCGggAGCGGc -3'
miRNA:   3'- cggUGUCGgaagCCCGCGCuaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 72126 0.66 0.927865
Target:  5'- gGCCACcccgaagAGCCc-CGGGUGCGAcuGCa- -3'
miRNA:   3'- -CGGUG-------UCGGaaGCCCGCGCUauUGcu -5'
23800 5' -55.1 NC_005261.1 + 109312 0.66 0.911409
Target:  5'- aGCCGCccuGGCCUcCGcGaGCGCGGccGCGGg -3'
miRNA:   3'- -CGGUG---UCGGAaGC-C-CGCGCUauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 47609 0.66 0.922976
Target:  5'- aGCCGCccCCUgCGGGgGCGGccGCGGc -3'
miRNA:   3'- -CGGUGucGGAaGCCCgCGCUauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 30383 0.66 0.933572
Target:  5'- cGCCGCGGCg--CGGGUG-GAgGugGAg -3'
miRNA:   3'- -CGGUGUCGgaaGCCCGCgCUaUugCU- -5'
23800 5' -55.1 NC_005261.1 + 98735 0.66 0.917314
Target:  5'- gGCaCGCGGCCgcgCGGGCGU--UGGCc- -3'
miRNA:   3'- -CG-GUGUCGGaa-GCCCGCGcuAUUGcu -5'
23800 5' -55.1 NC_005261.1 + 135644 0.66 0.911409
Target:  5'- cGCUGCuaCCUgcgCGGGCGCGG--GCGGc -3'
miRNA:   3'- -CGGUGucGGAa--GCCCGCGCUauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 103597 0.66 0.922976
Target:  5'- cGCCGCcguGGCCgcggCGGcaGCGCGGgagGCGGc -3'
miRNA:   3'- -CGGUG---UCGGaa--GCC--CGCGCUau-UGCU- -5'
23800 5' -55.1 NC_005261.1 + 87410 0.66 0.917314
Target:  5'- cGgCGCcGUCgaCGGGCGCGccGGCGAa -3'
miRNA:   3'- -CgGUGuCGGaaGCCCGCGCuaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 103426 0.66 0.922976
Target:  5'- gGCCGCGGCCacgCGcGcGCGCGccucGCGGu -3'
miRNA:   3'- -CGGUGUCGGaa-GC-C-CGCGCuau-UGCU- -5'
23800 5' -55.1 NC_005261.1 + 5151 0.66 0.905264
Target:  5'- cGCCuCGGCCcggCGGGcCGCGu---CGAg -3'
miRNA:   3'- -CGGuGUCGGaa-GCCC-GCGCuauuGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.