miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23800 5' -55.1 NC_005261.1 + 126944 0.74 0.535622
Target:  5'- gGCCAgGGgCgcCGGGCGCGggGGCGGc -3'
miRNA:   3'- -CGGUgUCgGaaGCCCGCGCuaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 3344 0.74 0.539626
Target:  5'- cGCCGCggcgcccggcgcgccGGCCUUCaGGGCcGCGAgcGCGGc -3'
miRNA:   3'- -CGGUG---------------UCGGAAG-CCCG-CGCUauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 46699 0.73 0.555736
Target:  5'- cGCCACGGCaUUCGcuaGCGCGAcGACGGc -3'
miRNA:   3'- -CGGUGUCGgAAGCc--CGCGCUaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 112056 0.73 0.565877
Target:  5'- aGCC--GGCCUUCGGGCGUGcccucgucGGCGAg -3'
miRNA:   3'- -CGGugUCGGAAGCCCGCGCua------UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 44308 0.73 0.565877
Target:  5'- gGCCGCuGCCcgCGGGCGCcgcaGACGGg -3'
miRNA:   3'- -CGGUGuCGGaaGCCCGCGcua-UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 128065 0.73 0.565877
Target:  5'- gGCCAUGGCgggCGGGCGgGcgAGCGAg -3'
miRNA:   3'- -CGGUGUCGgaaGCCCGCgCuaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 31558 0.73 0.586292
Target:  5'- cGCCugGGCCggguccuggaCGGGCGCGccgGACGu -3'
miRNA:   3'- -CGGugUCGGaa--------GCCCGCGCua-UUGCu -5'
23800 5' -55.1 NC_005261.1 + 80054 0.73 0.596554
Target:  5'- cGCCACuGgCggCGGGCGCGGggGGCGu -3'
miRNA:   3'- -CGGUGuCgGaaGCCCGCGCUa-UUGCu -5'
23800 5' -55.1 NC_005261.1 + 107242 0.72 0.606842
Target:  5'- -aCGCAGCCgcccacccgCGGGCGCGcgGGCa- -3'
miRNA:   3'- cgGUGUCGGaa-------GCCCGCGCuaUUGcu -5'
23800 5' -55.1 NC_005261.1 + 84959 0.72 0.606842
Target:  5'- gGCCGCcgaGGCg-UCGGGCGCGuccGCGAu -3'
miRNA:   3'- -CGGUG---UCGgaAGCCCGCGCuauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 44248 0.72 0.627469
Target:  5'- aGCgCGCGGCCgacgccgCGGcGCGCGGgggGGCGGg -3'
miRNA:   3'- -CG-GUGUCGGaa-----GCC-CGCGCUa--UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 70816 0.72 0.637792
Target:  5'- cGCCgGCGGCCc-CGGGCGCGccGGCGc -3'
miRNA:   3'- -CGG-UGUCGGaaGCCCGCGCuaUUGCu -5'
23800 5' -55.1 NC_005261.1 + 89402 0.72 0.637792
Target:  5'- uGCCGcCGGCCUUCcucGGCGCGugcGCGGc -3'
miRNA:   3'- -CGGU-GUCGGAAGc--CCGCGCuauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 1501 0.72 0.637792
Target:  5'- cGCCGCGGCCggcagcucgUCGGGCGCcagcuccAGCGc -3'
miRNA:   3'- -CGGUGUCGGa--------AGCCCGCGcua----UUGCu -5'
23800 5' -55.1 NC_005261.1 + 59950 0.72 0.64811
Target:  5'- aGCCGCAGCg--CGGcGCGCGugAACGGg -3'
miRNA:   3'- -CGGUGUCGgaaGCC-CGCGCuaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 30932 0.72 0.658415
Target:  5'- cGCCggcGCAGCCccUCGGGgGCGGgccuCGAg -3'
miRNA:   3'- -CGG---UGUCGGa-AGCCCgCGCUauu-GCU- -5'
23800 5' -55.1 NC_005261.1 + 68291 0.71 0.668699
Target:  5'- gGCCcCGGCCg-CGGGCGCGGaccucuGCGGc -3'
miRNA:   3'- -CGGuGUCGGaaGCCCGCGCUau----UGCU- -5'
23800 5' -55.1 NC_005261.1 + 29335 0.71 0.668699
Target:  5'- gGCCGCGuGCgCUUCGgcGGCGCGG--GCGAc -3'
miRNA:   3'- -CGGUGU-CG-GAAGC--CCGCGCUauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 31807 0.71 0.668699
Target:  5'- cGCCGCgcgcuGGCCUgagCGGcGCGCGcUGGCGc -3'
miRNA:   3'- -CGGUG-----UCGGAa--GCC-CGCGCuAUUGCu -5'
23800 5' -55.1 NC_005261.1 + 98299 0.71 0.668699
Target:  5'- uCCGCGGCC-UCGGGgGCGG--GCGc -3'
miRNA:   3'- cGGUGUCGGaAGCCCgCGCUauUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.