miRNA display CGI


Results 21 - 40 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23800 5' -55.1 NC_005261.1 + 13034 0.66 0.922976
Target:  5'- aCCACgAGCCa--GGGCGCGGggccGCGc -3'
miRNA:   3'- cGGUG-UCGGaagCCCGCGCUau--UGCu -5'
23800 5' -55.1 NC_005261.1 + 13119 0.68 0.863507
Target:  5'- cGUCgGCGGCCgcgGGGCGCGuguggucgGUGACGGc -3'
miRNA:   3'- -CGG-UGUCGGaagCCCGCGC--------UAUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 13661 0.68 0.847836
Target:  5'- uGCCGCcGCCgcgggggGGGCGCGGggcgcGCGGg -3'
miRNA:   3'- -CGGUGuCGGaag----CCCGCGCUau---UGCU- -5'
23800 5' -55.1 NC_005261.1 + 13950 0.7 0.729451
Target:  5'- gGCC-CAGCCgcgCGGaaacGCGCGGUcaggGACGAc -3'
miRNA:   3'- -CGGuGUCGGaa-GCC----CGCGCUA----UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 14362 0.77 0.387128
Target:  5'- aGCCGCGGCCgggGcGGCGCGGUGGCc- -3'
miRNA:   3'- -CGGUGUCGGaagC-CCGCGCUAUUGcu -5'
23800 5' -55.1 NC_005261.1 + 14987 0.66 0.928396
Target:  5'- gGCCGCgccGGCCgcgccCGGaGCGCGGgagGAgGAg -3'
miRNA:   3'- -CGGUG---UCGGaa---GCC-CGCGCUa--UUgCU- -5'
23800 5' -55.1 NC_005261.1 + 15425 0.71 0.678953
Target:  5'- cCCAgAGUCggcCGGGCGCGGgccGGCGAu -3'
miRNA:   3'- cGGUgUCGGaa-GCCCGCGCUa--UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 15935 0.67 0.890909
Target:  5'- gGCCGgGGCCcgggcaggagcCGGGgGCGAgUGGCGGg -3'
miRNA:   3'- -CGGUgUCGGaa---------GCCCgCGCU-AUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 16800 0.66 0.928396
Target:  5'- cGCCAggaAGCCgUCccagaacggGGGCguGCGGUAGCGGc -3'
miRNA:   3'- -CGGUg--UCGGaAG---------CCCG--CGCUAUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 21167 0.66 0.911409
Target:  5'- uGCCgagcagagauGCAGCCgcu-GGCGCGAgcGCGGc -3'
miRNA:   3'- -CGG----------UGUCGGaagcCCGCGCUauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 21797 0.71 0.709442
Target:  5'- cGCCGCAGCCgccggcCGGGC-CGGgcccGCGGc -3'
miRNA:   3'- -CGGUGUCGGaa----GCCCGcGCUau--UGCU- -5'
23800 5' -55.1 NC_005261.1 + 22732 0.69 0.777808
Target:  5'- aCCAgcGCCagUCGGGCGCGGggcGGCGGc -3'
miRNA:   3'- cGGUguCGGa-AGCCCGCGCUa--UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 23166 0.67 0.892261
Target:  5'- gGCCcgGCAGgCgcgcCGGGgGCGAcAGCGAg -3'
miRNA:   3'- -CGG--UGUCgGaa--GCCCgCGCUaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 23497 0.66 0.911409
Target:  5'- cGCCugGGCaggcgCGGGCccugggagcacGCGGUcgGGCGAg -3'
miRNA:   3'- -CGGugUCGgaa--GCCCG-----------CGCUA--UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 23617 0.7 0.739331
Target:  5'- cGCCGCuGCCg--GGGCGCG---GCGGg -3'
miRNA:   3'- -CGGUGuCGGaagCCCGCGCuauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 28218 0.76 0.428003
Target:  5'- uGCCGCGGCCccagcuaccccccggCGcGCGCGAUAGCGGg -3'
miRNA:   3'- -CGGUGUCGGaa-------------GCcCGCGCUAUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 28774 0.71 0.689167
Target:  5'- cGCCugGGCCgcggcgCGGGCGCuc--GCGGc -3'
miRNA:   3'- -CGGugUCGGaa----GCCCGCGcuauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 29195 0.69 0.787119
Target:  5'- cGCCGCGGCgCccgcgCGGGCGCGcgAcUGGg -3'
miRNA:   3'- -CGGUGUCG-Gaa---GCCCGCGCuaUuGCU- -5'
23800 5' -55.1 NC_005261.1 + 29335 0.71 0.668699
Target:  5'- gGCCGCGuGCgCUUCGgcGGCGCGG--GCGAc -3'
miRNA:   3'- -CGGUGU-CG-GAAGC--CCGCGCUauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 29605 0.66 0.922976
Target:  5'- gGCCACAGCUcguucaucacCGGGaGCG-UGACGGc -3'
miRNA:   3'- -CGGUGUCGGaa--------GCCCgCGCuAUUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.