miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23800 5' -55.1 NC_005261.1 + 121784 0.71 0.689167
Target:  5'- gGCCGCGGCCggCGGGCugggcaggggGCGcGUGGCu- -3'
miRNA:   3'- -CGGUGUCGGaaGCCCG----------CGC-UAUUGcu -5'
23800 5' -55.1 NC_005261.1 + 121124 0.69 0.777808
Target:  5'- gGgCGCGGaggcgCGGGCGCGAgcGCGAg -3'
miRNA:   3'- -CgGUGUCggaa-GCCCGCGCUauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 121045 0.66 0.917314
Target:  5'- cGCCACAcGUCgcgguugUGGcGCGCGGUGugcGCGGc -3'
miRNA:   3'- -CGGUGU-CGGaa-----GCC-CGCGCUAU---UGCU- -5'
23800 5' -55.1 NC_005261.1 + 119879 0.75 0.486571
Target:  5'- cGCCGCAGCCga-GGGCGUGuacaccUGGCGc -3'
miRNA:   3'- -CGGUGUCGGaagCCCGCGCu-----AUUGCu -5'
23800 5' -55.1 NC_005261.1 + 119127 0.67 0.892261
Target:  5'- gGCCGCGGCCgc--GGCGCGGccaucuCGGa -3'
miRNA:   3'- -CGGUGUCGGaagcCCGCGCUauu---GCU- -5'
23800 5' -55.1 NC_005261.1 + 118879 0.71 0.678953
Target:  5'- gGCCuCGGCCaccgCGGGCGCGcUggUGGc -3'
miRNA:   3'- -CGGuGUCGGaa--GCCCGCGCuAuuGCU- -5'
23800 5' -55.1 NC_005261.1 + 114816 0.67 0.884012
Target:  5'- cGCCGCAGCaccaccuacaCGGGCaccGUGAUcAACGAc -3'
miRNA:   3'- -CGGUGUCGgaa-------GCCCG---CGCUA-UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 113883 0.71 0.708435
Target:  5'- uGCCACcuguagcGGCgacgcggCGGGCGCGAUGGcCGAg -3'
miRNA:   3'- -CGGUG-------UCGgaa----GCCCGCGCUAUU-GCU- -5'
23800 5' -55.1 NC_005261.1 + 112808 0.68 0.855775
Target:  5'- -aCACGGCCg--GGGaCGCGcUGACGGg -3'
miRNA:   3'- cgGUGUCGGaagCCC-GCGCuAUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 112056 0.73 0.565877
Target:  5'- aGCC--GGCCUUCGGGCGUGcccucgucGGCGAg -3'
miRNA:   3'- -CGGugUCGGAAGCCCGCGCua------UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 111420 0.74 0.505954
Target:  5'- gGCCACAcGCCggCGGGCaaGAgacgGACGAc -3'
miRNA:   3'- -CGGUGU-CGGaaGCCCGcgCUa---UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 110513 0.67 0.89023
Target:  5'- cGUCACGGCCgucgUCugcggggcgcaggaGGGCGCGcgcACGGa -3'
miRNA:   3'- -CGGUGUCGGa---AG--------------CCCGCGCuauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 109312 0.66 0.911409
Target:  5'- aGCCGCccuGGCCUcCGcGaGCGCGGccGCGGg -3'
miRNA:   3'- -CGGUG---UCGGAaGC-C-CGCGCUauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 108749 0.67 0.892261
Target:  5'- cGCCGCGGCgUcCGcGGCGCGcc-GCGc -3'
miRNA:   3'- -CGGUGUCGgAaGC-CCGCGCuauUGCu -5'
23800 5' -55.1 NC_005261.1 + 108186 0.76 0.395608
Target:  5'- gGCCGCGGCUc-CGGGCGCGAgAGCu- -3'
miRNA:   3'- -CGGUGUCGGaaGCCCGCGCUaUUGcu -5'
23800 5' -55.1 NC_005261.1 + 107909 0.66 0.933572
Target:  5'- gGCCGCGGCC-UCGGccacgagugccGCGCGGa----- -3'
miRNA:   3'- -CGGUGUCGGaAGCC-----------CGCGCUauugcu -5'
23800 5' -55.1 NC_005261.1 + 107242 0.72 0.606842
Target:  5'- -aCGCAGCCgcccacccgCGGGCGCGcgGGCa- -3'
miRNA:   3'- cgGUGUCGGaa-------GCCCGCGCuaUUGcu -5'
23800 5' -55.1 NC_005261.1 + 105287 0.69 0.777808
Target:  5'- cGCCgGCgAGCC--CGGGCGCGcgAGCGc -3'
miRNA:   3'- -CGG-UG-UCGGaaGCCCGCGCuaUUGCu -5'
23800 5' -55.1 NC_005261.1 + 105227 0.68 0.831369
Target:  5'- gGCCGCGGCCg-CGGcCGUGAUcugcGGCGGc -3'
miRNA:   3'- -CGGUGUCGGaaGCCcGCGCUA----UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 104178 0.68 0.822855
Target:  5'- cGCCGCgcgcgGGUCgUCGGGCGgGAcGGCGu -3'
miRNA:   3'- -CGGUG-----UCGGaAGCCCGCgCUaUUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.