miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23800 5' -55.1 NC_005261.1 + 134572 0.71 0.668699
Target:  5'- cGCCGCGGCUgcgcaGGGCGgGccUGGCGAg -3'
miRNA:   3'- -CGGUGUCGGaag--CCCGCgCu-AUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 118879 0.71 0.678953
Target:  5'- gGCCuCGGCCaccgCGGGCGCGcUggUGGc -3'
miRNA:   3'- -CGGuGUCGGaa--GCCCGCGCuAuuGCU- -5'
23800 5' -55.1 NC_005261.1 + 15425 0.71 0.678953
Target:  5'- cCCAgAGUCggcCGGGCGCGGgccGGCGAu -3'
miRNA:   3'- cGGUgUCGGaa-GCCCGCGCUa--UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 73483 0.71 0.678953
Target:  5'- gGCCGCGGCg--CGGcGCGCGGacGCGGc -3'
miRNA:   3'- -CGGUGUCGgaaGCC-CGCGCUauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 125471 0.71 0.678953
Target:  5'- cGCCGagaaAGCCg-CGGGCGCGAaAACu- -3'
miRNA:   3'- -CGGUg---UCGGaaGCCCGCGCUaUUGcu -5'
23800 5' -55.1 NC_005261.1 + 51421 0.71 0.689167
Target:  5'- cCCACcGCCUgcugggcccCGGGCGCGccGUGAUGAu -3'
miRNA:   3'- cGGUGuCGGAa--------GCCCGCGC--UAUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 121784 0.71 0.689167
Target:  5'- gGCCGCGGCCggCGGGCugggcaggggGCGcGUGGCu- -3'
miRNA:   3'- -CGGUGUCGGaaGCCCG----------CGC-UAUUGcu -5'
23800 5' -55.1 NC_005261.1 + 28774 0.71 0.689167
Target:  5'- cGCCugGGCCgcggcgCGGGCGCuc--GCGGc -3'
miRNA:   3'- -CGGugUCGGaa----GCCCGCGcuauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 38936 0.71 0.699334
Target:  5'- aGCCgGCGGCCgggCGGGCcGCGGcgcGCGGg -3'
miRNA:   3'- -CGG-UGUCGGaa-GCCCG-CGCUau-UGCU- -5'
23800 5' -55.1 NC_005261.1 + 134524 0.71 0.699334
Target:  5'- cGCCuGCAGCUgcUGGGCGCGcaGACGu -3'
miRNA:   3'- -CGG-UGUCGGaaGCCCGCGCuaUUGCu -5'
23800 5' -55.1 NC_005261.1 + 127084 0.71 0.707426
Target:  5'- cGCCGCGccGCCgcaaugacggcUGGGCGCGGUGACc- -3'
miRNA:   3'- -CGGUGU--CGGaa---------GCCCGCGCUAUUGcu -5'
23800 5' -55.1 NC_005261.1 + 113883 0.71 0.708435
Target:  5'- uGCCACcuguagcGGCgacgcggCGGGCGCGAUGGcCGAg -3'
miRNA:   3'- -CGGUG-------UCGgaa----GCCCGCGCUAUU-GCU- -5'
23800 5' -55.1 NC_005261.1 + 21797 0.71 0.709442
Target:  5'- cGCCGCAGCCgccggcCGGGC-CGGgcccGCGGc -3'
miRNA:   3'- -CGGUGUCGGaa----GCCCGcGCUau--UGCU- -5'
23800 5' -55.1 NC_005261.1 + 104053 0.71 0.709442
Target:  5'- uGCCGCAGCgCcUCGGcCGCGAgcGCGu -3'
miRNA:   3'- -CGGUGUCG-GaAGCCcGCGCUauUGCu -5'
23800 5' -55.1 NC_005261.1 + 127760 0.71 0.709442
Target:  5'- gGCCGCGGC----GGGCGCGAaGACGc -3'
miRNA:   3'- -CGGUGUCGgaagCCCGCGCUaUUGCu -5'
23800 5' -55.1 NC_005261.1 + 77761 0.7 0.719485
Target:  5'- -aCGCAGCCg--GGGCGgCGggGACGAc -3'
miRNA:   3'- cgGUGUCGGaagCCCGC-GCuaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 348 0.7 0.719485
Target:  5'- cCCGCAGCCcggCGcGGCccggcgGCGGUGGCGGc -3'
miRNA:   3'- cGGUGUCGGaa-GC-CCG------CGCUAUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 1402 0.7 0.719485
Target:  5'- cGCCGCGGCCgcggCGGcG-GCGggGGCGGc -3'
miRNA:   3'- -CGGUGUCGGaa--GCC-CgCGCuaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 2550 0.7 0.719485
Target:  5'- cGCCGCGGCgCU--GGGCGCGG--GCGu -3'
miRNA:   3'- -CGGUGUCG-GAagCCCGCGCUauUGCu -5'
23800 5' -55.1 NC_005261.1 + 68579 0.7 0.719485
Target:  5'- cGUCGCcGCCgaggCGGGcCGCGggAGCGGg -3'
miRNA:   3'- -CGGUGuCGGaa--GCCC-GCGCuaUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.