miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23800 5' -55.1 NC_005261.1 + 70167 0.66 0.905264
Target:  5'- --aACAGCagcaGGGCGCGggAGCGGc -3'
miRNA:   3'- cggUGUCGgaagCCCGCGCuaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 90060 0.66 0.905264
Target:  5'- aGCCAgCGGCgCcccgCGGGCGcCGAgggcAGCGAc -3'
miRNA:   3'- -CGGU-GUCG-Gaa--GCCCGC-GCUa---UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 73207 0.67 0.89888
Target:  5'- gGCCcCGggcGCCUcgagGGGCGCGGUGgccGCGAg -3'
miRNA:   3'- -CGGuGU---CGGAag--CCCGCGCUAU---UGCU- -5'
23800 5' -55.1 NC_005261.1 + 52736 0.67 0.89888
Target:  5'- cGCCGCGGCgCgaUCGGGgaaguggccCGCGAgGACGu -3'
miRNA:   3'- -CGGUGUCG-Ga-AGCCC---------GCGCUaUUGCu -5'
23800 5' -55.1 NC_005261.1 + 36995 0.67 0.89888
Target:  5'- aGCCGgAGCCcgCGGGCuGCGcgGggccaguuuGCGGg -3'
miRNA:   3'- -CGGUgUCGGaaGCCCG-CGCuaU---------UGCU- -5'
23800 5' -55.1 NC_005261.1 + 58652 0.67 0.89888
Target:  5'- cGCCAgCAGCaagaagCaGGCGCGGUGguACGGc -3'
miRNA:   3'- -CGGU-GUCGgaa---GcCCGCGCUAU--UGCU- -5'
23800 5' -55.1 NC_005261.1 + 77653 0.67 0.898229
Target:  5'- cGCCgACGGCCggCgccugcaggcgcaGGGCGCGG--ACGGg -3'
miRNA:   3'- -CGG-UGUCGGaaG-------------CCCGCGCUauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 59599 0.67 0.892261
Target:  5'- cGCCACcaCCUcCGcGGCGCGGcgGAUGAg -3'
miRNA:   3'- -CGGUGucGGAaGC-CCGCGCUa-UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 4513 0.67 0.892261
Target:  5'- aGUCGCGcGCCcgcgCGGGCGCcgcGGCGAg -3'
miRNA:   3'- -CGGUGU-CGGaa--GCCCGCGcuaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 23166 0.67 0.892261
Target:  5'- gGCCcgGCAGgCgcgcCGGGgGCGAcAGCGAg -3'
miRNA:   3'- -CGG--UGUCgGaa--GCCCgCGCUaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 101682 0.67 0.892261
Target:  5'- gGCCG-AGCCggcgaagCGGGCGUGGU--CGAa -3'
miRNA:   3'- -CGGUgUCGGaa-----GCCCGCGCUAuuGCU- -5'
23800 5' -55.1 NC_005261.1 + 5277 0.67 0.892261
Target:  5'- cGCCAUGGCCggcCGcGGUGCGc--GCGGg -3'
miRNA:   3'- -CGGUGUCGGaa-GC-CCGCGCuauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 5529 0.67 0.892261
Target:  5'- gGCCGCcGgCUUCGGcGCGC---AGCGAg -3'
miRNA:   3'- -CGGUGuCgGAAGCC-CGCGcuaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 119127 0.67 0.892261
Target:  5'- gGCCGCGGCCgc--GGCGCGGccaucuCGGa -3'
miRNA:   3'- -CGGUGUCGGaagcCCGCGCUauu---GCU- -5'
23800 5' -55.1 NC_005261.1 + 108749 0.67 0.892261
Target:  5'- cGCCGCGGCgUcCGcGGCGCGcc-GCGc -3'
miRNA:   3'- -CGGUGUCGgAaGC-CCGCGCuauUGCu -5'
23800 5' -55.1 NC_005261.1 + 15935 0.67 0.890909
Target:  5'- gGCCGgGGCCcgggcaggagcCGGGgGCGAgUGGCGGg -3'
miRNA:   3'- -CGGUgUCGGaa---------GCCCgCGCU-AUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 110513 0.67 0.89023
Target:  5'- cGUCACGGCCgucgUCugcggggcgcaggaGGGCGCGcgcACGGa -3'
miRNA:   3'- -CGGUGUCGGa---AG--------------CCCGCGCuauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 98052 0.67 0.88541
Target:  5'- gGCCGCGGgCggCGGGacCGCGGgcgGCGGg -3'
miRNA:   3'- -CGGUGUCgGaaGCCC--GCGCUau-UGCU- -5'
23800 5' -55.1 NC_005261.1 + 36588 0.67 0.88541
Target:  5'- cGCCGCGGCCacCGGGgGgGGgcaGCGc -3'
miRNA:   3'- -CGGUGUCGGaaGCCCgCgCUau-UGCu -5'
23800 5' -55.1 NC_005261.1 + 33356 0.67 0.88541
Target:  5'- cGCCACcGCCgcCGGGcCGCGccgggcuGCGGg -3'
miRNA:   3'- -CGGUGuCGGaaGCCC-GCGCuau----UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.