miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23800 5' -55.1 NC_005261.1 + 29885 0.66 0.905264
Target:  5'- uGCCGCcagcgcccgGGCCcgCGGcaGCGCGcgAGCGGc -3'
miRNA:   3'- -CGGUG---------UCGGaaGCC--CGCGCuaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 29945 0.68 0.847836
Target:  5'- cGCUGCGGCCUgccgCGaGGCGCuagaGGCGGc -3'
miRNA:   3'- -CGGUGUCGGAa---GC-CCGCGcua-UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 30042 0.68 0.822855
Target:  5'- gGCCGCGGCCUgcCGGcCGCGGccuGCGc -3'
miRNA:   3'- -CGGUGUCGGAa-GCCcGCGCUau-UGCu -5'
23800 5' -55.1 NC_005261.1 + 30383 0.66 0.933572
Target:  5'- cGCCGCGGCg--CGGGUG-GAgGugGAg -3'
miRNA:   3'- -CGGUGUCGgaaGCCCGCgCUaUugCU- -5'
23800 5' -55.1 NC_005261.1 + 30932 0.72 0.658415
Target:  5'- cGCCggcGCAGCCccUCGGGgGCGGgccuCGAg -3'
miRNA:   3'- -CGG---UGUCGGa-AGCCCgCGCUauu-GCU- -5'
23800 5' -55.1 NC_005261.1 + 31307 0.68 0.863507
Target:  5'- cGCCGCgcggGGCCcgCGGGCGCGcu--CGc -3'
miRNA:   3'- -CGGUG----UCGGaaGCCCGCGCuauuGCu -5'
23800 5' -55.1 NC_005261.1 + 31558 0.73 0.586292
Target:  5'- cGCCugGGCCggguccuggaCGGGCGCGccgGACGu -3'
miRNA:   3'- -CGGugUCGGaa--------GCCCGCGCua-UUGCu -5'
23800 5' -55.1 NC_005261.1 + 31670 0.69 0.814164
Target:  5'- uGCCuGCGGCUggcCGcGGCGCGGcGGCGGc -3'
miRNA:   3'- -CGG-UGUCGGaa-GC-CCGCGCUaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 31807 0.71 0.668699
Target:  5'- cGCCGCgcgcuGGCCUgagCGGcGCGCGcUGGCGc -3'
miRNA:   3'- -CGGUG-----UCGGAa--GCC-CGCGCuAUUGCu -5'
23800 5' -55.1 NC_005261.1 + 32036 0.7 0.739331
Target:  5'- uGCCGCGGCUcgaCGGGCGCaagGACa- -3'
miRNA:   3'- -CGGUGUCGGaa-GCCCGCGcuaUUGcu -5'
23800 5' -55.1 NC_005261.1 + 32319 0.67 0.878331
Target:  5'- cGCCGCGGCCgcggCGcccGGCGUGGccuggGACGc -3'
miRNA:   3'- -CGGUGUCGGaa--GC---CCGCGCUa----UUGCu -5'
23800 5' -55.1 NC_005261.1 + 33356 0.67 0.88541
Target:  5'- cGCCACcGCCgcCGGGcCGCGccgggcuGCGGg -3'
miRNA:   3'- -CGGUGuCGGaaGCCC-GCGCuau----UGCU- -5'
23800 5' -55.1 NC_005261.1 + 33474 0.7 0.766461
Target:  5'- cGCCGCAGCCgggcccgcucgCGGGgccCGCGAgcaccaggGGCGGc -3'
miRNA:   3'- -CGGUGUCGGaa---------GCCC---GCGCUa-------UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 35775 0.69 0.814164
Target:  5'- gGCCGagacaggaGGCCcgCGGGCGCcAUGGCGc -3'
miRNA:   3'- -CGGUg-------UCGGaaGCCCGCGcUAUUGCu -5'
23800 5' -55.1 NC_005261.1 + 35930 0.74 0.49622
Target:  5'- cGCCGCAGCCcagCGGGCGCccaggccCGAg -3'
miRNA:   3'- -CGGUGUCGGaa-GCCCGCGcuauu--GCU- -5'
23800 5' -55.1 NC_005261.1 + 36588 0.67 0.88541
Target:  5'- cGCCGCGGCCacCGGGgGgGGgcaGCGc -3'
miRNA:   3'- -CGGUGUCGGaaGCCCgCgCUau-UGCu -5'
23800 5' -55.1 NC_005261.1 + 36995 0.67 0.89888
Target:  5'- aGCCGgAGCCcgCGGGCuGCGcgGggccaguuuGCGGg -3'
miRNA:   3'- -CGGUgUCGGaaGCCCG-CGCuaU---------UGCU- -5'
23800 5' -55.1 NC_005261.1 + 38936 0.71 0.699334
Target:  5'- aGCCgGCGGCCgggCGGGCcGCGGcgcGCGGg -3'
miRNA:   3'- -CGG-UGUCGGaa-GCCCG-CGCUau-UGCU- -5'
23800 5' -55.1 NC_005261.1 + 39221 0.74 0.535622
Target:  5'- cGCCAUGGCCcUCGcGCGCGccGGCGAg -3'
miRNA:   3'- -CGGUGUCGGaAGCcCGCGCuaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 40840 0.68 0.831369
Target:  5'- uCCACguaAGCCUcgaaGGGCGCGuccGCGAa -3'
miRNA:   3'- cGGUG---UCGGAag--CCCGCGCuauUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.