miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23800 5' -55.1 NC_005261.1 + 104053 0.71 0.709442
Target:  5'- uGCCGCAGCgCcUCGGcCGCGAgcGCGu -3'
miRNA:   3'- -CGGUGUCG-GaAGCCcGCGCUauUGCu -5'
23800 5' -55.1 NC_005261.1 + 103908 0.69 0.805306
Target:  5'- gGCCACccgcGCCgccaggUCGGGCGCG---GCGu -3'
miRNA:   3'- -CGGUGu---CGGa-----AGCCCGCGCuauUGCu -5'
23800 5' -55.1 NC_005261.1 + 103597 0.66 0.922976
Target:  5'- cGCCGCcguGGCCgcggCGGcaGCGCGGgagGCGGc -3'
miRNA:   3'- -CGGUG---UCGGaa--GCC--CGCGCUau-UGCU- -5'
23800 5' -55.1 NC_005261.1 + 103426 0.66 0.922976
Target:  5'- gGCCGCGGCCacgCGcGcGCGCGccucGCGGu -3'
miRNA:   3'- -CGGUGUCGGaa-GC-C-CGCGCuau-UGCU- -5'
23800 5' -55.1 NC_005261.1 + 103172 0.67 0.868795
Target:  5'- uGCCACAGCCgguccugcacgcccgCGGucacGCGCGGcGGCGc -3'
miRNA:   3'- -CGGUGUCGGaa-------------GCC----CGCGCUaUUGCu -5'
23800 5' -55.1 NC_005261.1 + 102955 0.67 0.871028
Target:  5'- gGCgGCGGCCg-CGGGCGCc---GCGGg -3'
miRNA:   3'- -CGgUGUCGGaaGCCCGCGcuauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 102190 0.67 0.878331
Target:  5'- uCCGCGcGUUcUCGGGCGCGu--GCGGg -3'
miRNA:   3'- cGGUGU-CGGaAGCCCGCGCuauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 101682 0.67 0.892261
Target:  5'- gGCCG-AGCCggcgaagCGGGCGUGGU--CGAa -3'
miRNA:   3'- -CGGUgUCGGaa-----GCCCGCGCUAuuGCU- -5'
23800 5' -55.1 NC_005261.1 + 100720 0.68 0.831369
Target:  5'- aGCCGCGGCCgcgccgCGcGCGCGcgcGGCGGc -3'
miRNA:   3'- -CGGUGUCGGaa----GCcCGCGCua-UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 100240 0.66 0.927865
Target:  5'- cGCCGggcgcacgucugcCAGCCcccagUCGGcGCGCcGGUGGCGc -3'
miRNA:   3'- -CGGU-------------GUCGGa----AGCC-CGCG-CUAUUGCu -5'
23800 5' -55.1 NC_005261.1 + 99873 0.68 0.855775
Target:  5'- cGCCGCcGCCgcucGGCGCGAgGGCGu -3'
miRNA:   3'- -CGGUGuCGGaagcCCGCGCUaUUGCu -5'
23800 5' -55.1 NC_005261.1 + 99781 0.67 0.871028
Target:  5'- --gGCGGCCcgggucccagUCGcGGCGCGgAUGGCGAa -3'
miRNA:   3'- cggUGUCGGa---------AGC-CCGCGC-UAUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 98777 0.68 0.847836
Target:  5'- cGCCGCcGGCCgcCGGccGCGCGu--GCGAa -3'
miRNA:   3'- -CGGUG-UCGGaaGCC--CGCGCuauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 98735 0.66 0.917314
Target:  5'- gGCaCGCGGCCgcgCGGGCGU--UGGCc- -3'
miRNA:   3'- -CG-GUGUCGGaa-GCCCGCGcuAUUGcu -5'
23800 5' -55.1 NC_005261.1 + 98299 0.71 0.668699
Target:  5'- uCCGCGGCC-UCGGGgGCGG--GCGc -3'
miRNA:   3'- cGGUGUCGGaAGCCCgCGCUauUGCu -5'
23800 5' -55.1 NC_005261.1 + 98246 0.67 0.878331
Target:  5'- uCCGCGGCCcggUGcGGCGCGucaGGCGGc -3'
miRNA:   3'- cGGUGUCGGaa-GC-CCGCGCua-UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 98052 0.67 0.88541
Target:  5'- gGCCGCGGgCggCGGGacCGCGGgcgGCGGg -3'
miRNA:   3'- -CGGUGUCgGaaGCCC--GCGCUau-UGCU- -5'
23800 5' -55.1 NC_005261.1 + 97405 0.7 0.729451
Target:  5'- uGCCGCGGgCUuggCGGGCGCGccgGGCc- -3'
miRNA:   3'- -CGGUGUCgGAa--GCCCGCGCua-UUGcu -5'
23800 5' -55.1 NC_005261.1 + 97210 0.66 0.933572
Target:  5'- cGCCGCGGCCacgcUCGGaG-GCGcUGGCGc -3'
miRNA:   3'- -CGGUGUCGGa---AGCC-CgCGCuAUUGCu -5'
23800 5' -55.1 NC_005261.1 + 97132 0.66 0.933572
Target:  5'- cGCCGCGGCCacgcUCGGaG-GCGcUGGCGc -3'
miRNA:   3'- -CGGUGUCGGa---AGCC-CgCGCuAUUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.