miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23800 5' -55.1 NC_005261.1 + 68981 0.75 0.467547
Target:  5'- aCCGCGGCCcuuUUCGGGCcGCGcgGGCGc -3'
miRNA:   3'- cGGUGUCGG---AAGCCCG-CGCuaUUGCu -5'
23800 5' -55.1 NC_005261.1 + 96964 0.75 0.477012
Target:  5'- --gGCAGCCgcCGGGCGCGAUucacGCGGc -3'
miRNA:   3'- cggUGUCGGaaGCCCGCGCUAu---UGCU- -5'
23800 5' -55.1 NC_005261.1 + 89090 0.75 0.477012
Target:  5'- gGCUGCGGCC--CGGGCGCGcUGGCGc -3'
miRNA:   3'- -CGGUGUCGGaaGCCCGCGCuAUUGCu -5'
23800 5' -55.1 NC_005261.1 + 70558 0.75 0.477012
Target:  5'- cGCCGCAgggcGCCgcgaagagcUCGGGCGCGAgcgcAGCGGc -3'
miRNA:   3'- -CGGUGU----CGGa--------AGCCCGCGCUa---UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 119879 0.75 0.486571
Target:  5'- cGCCGCAGCCga-GGGCGUGuacaccUGGCGc -3'
miRNA:   3'- -CGGUGUCGGaagCCCGCGCu-----AUUGCu -5'
23800 5' -55.1 NC_005261.1 + 35930 0.74 0.49622
Target:  5'- cGCCGCAGCCcagCGGGCGCccaggccCGAg -3'
miRNA:   3'- -CGGUGUCGGaa-GCCCGCGcuauu--GCU- -5'
23800 5' -55.1 NC_005261.1 + 71612 0.82 0.195056
Target:  5'- cGCCGCGGCC--CGGGCGCGGgcccgGGCGGc -3'
miRNA:   3'- -CGGUGUCGGaaGCCCGCGCUa----UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 43143 0.74 0.503025
Target:  5'- cGCgCGCGGCCUgcgcgccgccgacaUCGcGGCGCGAUAcggcgccgccgGCGAg -3'
miRNA:   3'- -CG-GUGUCGGA--------------AGC-CCGCGCUAU-----------UGCU- -5'
23800 5' -55.1 NC_005261.1 + 111420 0.74 0.505954
Target:  5'- gGCCACAcGCCggCGGGCaaGAgacgGACGAc -3'
miRNA:   3'- -CGGUGU-CGGaaGCCCGcgCUa---UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 48699 0.74 0.515769
Target:  5'- gGCCAuCAcGCCggCGGGCGUGAUGuugcaACGGg -3'
miRNA:   3'- -CGGU-GU-CGGaaGCCCGCGCUAU-----UGCU- -5'
23800 5' -55.1 NC_005261.1 + 126944 0.74 0.535622
Target:  5'- gGCCAgGGgCgcCGGGCGCGggGGCGGc -3'
miRNA:   3'- -CGGUgUCgGaaGCCCGCGCuaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 39221 0.74 0.535622
Target:  5'- cGCCAUGGCCcUCGcGCGCGccGGCGAg -3'
miRNA:   3'- -CGGUGUCGGaAGCcCGCGCuaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 3344 0.74 0.539626
Target:  5'- cGCCGCggcgcccggcgcgccGGCCUUCaGGGCcGCGAgcGCGGc -3'
miRNA:   3'- -CGGUG---------------UCGGAAG-CCCG-CGCUauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 46699 0.73 0.555736
Target:  5'- cGCCACGGCaUUCGcuaGCGCGAcGACGGc -3'
miRNA:   3'- -CGGUGUCGgAAGCc--CGCGCUaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 112056 0.73 0.565877
Target:  5'- aGCC--GGCCUUCGGGCGUGcccucgucGGCGAg -3'
miRNA:   3'- -CGGugUCGGAAGCCCGCGCua------UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 44308 0.73 0.565877
Target:  5'- gGCCGCuGCCcgCGGGCGCcgcaGACGGg -3'
miRNA:   3'- -CGGUGuCGGaaGCCCGCGcua-UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 128065 0.73 0.565877
Target:  5'- gGCCAUGGCgggCGGGCGgGcgAGCGAg -3'
miRNA:   3'- -CGGUGUCGgaaGCCCGCgCuaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 31558 0.73 0.586292
Target:  5'- cGCCugGGCCggguccuggaCGGGCGCGccgGACGu -3'
miRNA:   3'- -CGGugUCGGaa--------GCCCGCGCua-UUGCu -5'
23800 5' -55.1 NC_005261.1 + 80054 0.73 0.596554
Target:  5'- cGCCACuGgCggCGGGCGCGGggGGCGu -3'
miRNA:   3'- -CGGUGuCgGaaGCCCGCGCUa-UUGCu -5'
23800 5' -55.1 NC_005261.1 + 107242 0.72 0.606842
Target:  5'- -aCGCAGCCgcccacccgCGGGCGCGcgGGCa- -3'
miRNA:   3'- cgGUGUCGGaa-------GCCCGCGCuaUUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.