miRNA display CGI


Results 61 - 80 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23800 5' -55.1 NC_005261.1 + 1402 0.7 0.719485
Target:  5'- cGCCGCGGCCgcggCGGcG-GCGggGGCGGc -3'
miRNA:   3'- -CGGUGUCGGaa--GCC-CgCGCuaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 97405 0.7 0.729451
Target:  5'- uGCCGCGGgCUuggCGGGCGCGccgGGCc- -3'
miRNA:   3'- -CGGUGUCgGAa--GCCCGCGCua-UUGcu -5'
23800 5' -55.1 NC_005261.1 + 13950 0.7 0.729451
Target:  5'- gGCC-CAGCCgcgCGGaaacGCGCGGUcaggGACGAc -3'
miRNA:   3'- -CGGuGUCGGaa-GCC----CGCGCUA----UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 32036 0.7 0.739331
Target:  5'- uGCCGCGGCUcgaCGGGCGCaagGACa- -3'
miRNA:   3'- -CGGUGUCGGaa-GCCCGCGcuaUUGcu -5'
23800 5' -55.1 NC_005261.1 + 75192 0.7 0.739331
Target:  5'- uGUCGCGGaCCUUCauggcGGcCGCGGUGGCGGc -3'
miRNA:   3'- -CGGUGUC-GGAAGc----CC-GCGCUAUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 12301 0.7 0.739331
Target:  5'- cGCCGCGGgCa-CGGGCGCGuagccGGCGGg -3'
miRNA:   3'- -CGGUGUCgGaaGCCCGCGCua---UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 23617 0.7 0.739331
Target:  5'- cGCCGCuGCCg--GGGCGCG---GCGGg -3'
miRNA:   3'- -CGGUGuCGGaagCCCGCGCuauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 53716 0.7 0.749117
Target:  5'- cGCCGCGGCCagcugCGGcGCGCccgcacgGGCGAg -3'
miRNA:   3'- -CGGUGUCGGaa---GCC-CGCGcua----UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 33474 0.7 0.766461
Target:  5'- cGCCGCAGCCgggcccgcucgCGGGgccCGCGAgcaccaggGGCGGc -3'
miRNA:   3'- -CGGUGUCGGaa---------GCCC---GCGCUa-------UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 76047 0.7 0.768365
Target:  5'- cGCCAUcagcguGGCCggCGGGCGCcaccagGGCGGg -3'
miRNA:   3'- -CGGUG------UCGGaaGCCCGCGcua---UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 97009 0.7 0.768365
Target:  5'- cGCCAUugggcgGGCCgUCGGGCGCGcc--CGGc -3'
miRNA:   3'- -CGGUG------UCGGaAGCCCGCGCuauuGCU- -5'
23800 5' -55.1 NC_005261.1 + 121124 0.69 0.777808
Target:  5'- gGgCGCGGaggcgCGGGCGCGAgcGCGAg -3'
miRNA:   3'- -CgGUGUCggaa-GCCCGCGCUauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 22732 0.69 0.777808
Target:  5'- aCCAgcGCCagUCGGGCGCGGggcGGCGGc -3'
miRNA:   3'- cGGUguCGGa-AGCCCGCGCUa--UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 105287 0.69 0.777808
Target:  5'- cGCCgGCgAGCC--CGGGCGCGcgAGCGc -3'
miRNA:   3'- -CGG-UG-UCGGaaGCCCGCGCuaUUGCu -5'
23800 5' -55.1 NC_005261.1 + 132655 0.69 0.777808
Target:  5'- gGCCcuaGCGGCCgcgugUGGGUGCGAgGACa- -3'
miRNA:   3'- -CGG---UGUCGGaa---GCCCGCGCUaUUGcu -5'
23800 5' -55.1 NC_005261.1 + 88705 0.69 0.777808
Target:  5'- gGCCGCcguugaccuGGCCUgCGGgguGCGCGAUGAgGGc -3'
miRNA:   3'- -CGGUG---------UCGGAaGCC---CGCGCUAUUgCU- -5'
23800 5' -55.1 NC_005261.1 + 93244 0.69 0.777808
Target:  5'- gGCCGCcgucGCCUUCGaccGGCGCGccAGCGc -3'
miRNA:   3'- -CGGUGu---CGGAAGC---CCGCGCuaUUGCu -5'
23800 5' -55.1 NC_005261.1 + 94626 0.69 0.777808
Target:  5'- cGCCGCcggcGCCgucgUCGGcGCGCGcgAACa- -3'
miRNA:   3'- -CGGUGu---CGGa---AGCC-CGCGCuaUUGcu -5'
23800 5' -55.1 NC_005261.1 + 90665 0.69 0.783411
Target:  5'- cGUCGCGGCCaccgugacgaccaUCGGGCGCGAcauGCu- -3'
miRNA:   3'- -CGGUGUCGGa------------AGCCCGCGCUau-UGcu -5'
23800 5' -55.1 NC_005261.1 + 29195 0.69 0.787119
Target:  5'- cGCCGCGGCgCccgcgCGGGCGCGcgAcUGGg -3'
miRNA:   3'- -CGGUGUCG-Gaa---GCCCGCGCuaUuGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.