miRNA display CGI


Results 61 - 80 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23800 5' -55.1 NC_005261.1 + 33356 0.67 0.88541
Target:  5'- cGCCACcGCCgcCGGGcCGCGccgggcuGCGGg -3'
miRNA:   3'- -CGGUGuCGGaaGCCC-GCGCuau----UGCU- -5'
23800 5' -55.1 NC_005261.1 + 114816 0.67 0.884012
Target:  5'- cGCCGCAGCaccaccuacaCGGGCaccGUGAUcAACGAc -3'
miRNA:   3'- -CGGUGUCGgaa-------GCCCG---CGCUA-UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 127807 0.67 0.878331
Target:  5'- cGCCGCGGCgg-CGGGCcgcucgcgcucGCGGccGCGAg -3'
miRNA:   3'- -CGGUGUCGgaaGCCCG-----------CGCUauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 102190 0.67 0.878331
Target:  5'- uCCGCGcGUUcUCGGGCGCGu--GCGGg -3'
miRNA:   3'- cGGUGU-CGGaAGCCCGCGCuauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 98246 0.67 0.878331
Target:  5'- uCCGCGGCCcggUGcGGCGCGucaGGCGGc -3'
miRNA:   3'- cGGUGUCGGaa-GC-CCGCGCua-UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 87955 0.67 0.878331
Target:  5'- cGCCACGGCCcgccggcggCGGGCuCGGUAu--- -3'
miRNA:   3'- -CGGUGUCGGaa-------GCCCGcGCUAUugcu -5'
23800 5' -55.1 NC_005261.1 + 32319 0.67 0.878331
Target:  5'- cGCCGCGGCCgcggCGcccGGCGUGGccuggGACGc -3'
miRNA:   3'- -CGGUGUCGGaa--GC---CCGCGCUa----UUGCu -5'
23800 5' -55.1 NC_005261.1 + 69522 0.67 0.878331
Target:  5'- uGCCGgAGCUggcgCGGGCGC--UGGCGc -3'
miRNA:   3'- -CGGUgUCGGaa--GCCCGCGcuAUUGCu -5'
23800 5' -55.1 NC_005261.1 + 49459 0.67 0.878331
Target:  5'- cGCCGCGGaaggCGGGCGCGcaggccgcGCGGa -3'
miRNA:   3'- -CGGUGUCggaaGCCCGCGCuau-----UGCU- -5'
23800 5' -55.1 NC_005261.1 + 11219 0.67 0.876888
Target:  5'- cGCCGCguGGCCccccgCGGGCGCGcuuccuccuCGAu -3'
miRNA:   3'- -CGGUG--UCGGaa---GCCCGCGCuauu-----GCU- -5'
23800 5' -55.1 NC_005261.1 + 96603 0.67 0.871028
Target:  5'- uGCCGCAGCacgUCGcgcguGGCGCGcagccgccgGGCGAu -3'
miRNA:   3'- -CGGUGUCGga-AGC-----CCGCGCua-------UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 99781 0.67 0.871028
Target:  5'- --gGCGGCCcgggucccagUCGcGGCGCGgAUGGCGAa -3'
miRNA:   3'- cggUGUCGGa---------AGC-CCGCGC-UAUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 64764 0.67 0.871028
Target:  5'- gGCCuCGGCCagcUCGcGGCGCGcc-ACGAc -3'
miRNA:   3'- -CGGuGUCGGa--AGC-CCGCGCuauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 102955 0.67 0.871028
Target:  5'- gGCgGCGGCCg-CGGGCGCc---GCGGg -3'
miRNA:   3'- -CGgUGUCGGaaGCCCGCGcuauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 91729 0.67 0.871028
Target:  5'- cGCCGCGGCgggCUUCGcGGCGCucacgccGGCGGc -3'
miRNA:   3'- -CGGUGUCG---GAAGC-CCGCGcua----UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 103172 0.67 0.868795
Target:  5'- uGCCACAGCCgguccugcacgcccgCGGucacGCGCGGcGGCGc -3'
miRNA:   3'- -CGGUGUCGGaa-------------GCC----CGCGCUaUUGCu -5'
23800 5' -55.1 NC_005261.1 + 131452 0.68 0.866541
Target:  5'- cGCCGC-GCCUcgCGGGCGCcucccgccuccGCGAg -3'
miRNA:   3'- -CGGUGuCGGAa-GCCCGCGcuau-------UGCU- -5'
23800 5' -55.1 NC_005261.1 + 54875 0.68 0.866541
Target:  5'- -gCACGGCCggaugaugcgUCGGcGCGCGcgugccgcagcgcgcGUAGCGAg -3'
miRNA:   3'- cgGUGUCGGa---------AGCC-CGCGC---------------UAUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 31307 0.68 0.863507
Target:  5'- cGCCGCgcggGGCCcgCGGGCGCGcu--CGc -3'
miRNA:   3'- -CGGUG----UCGGaaGCCCGCGCuauuGCu -5'
23800 5' -55.1 NC_005261.1 + 463 0.68 0.863507
Target:  5'- cGCgACGGCCggCGggauGGCGCGggGAgGAg -3'
miRNA:   3'- -CGgUGUCGGaaGC----CCGCGCuaUUgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.