miRNA display CGI


Results 61 - 80 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23800 5' -55.1 NC_005261.1 + 41626 0.66 0.926795
Target:  5'- gGCUGCGGCCcUCGGcgaccuugaggugcGCGUGGaGGCGGc -3'
miRNA:   3'- -CGGUGUCGGaAGCC--------------CGCGCUaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 43143 0.74 0.503025
Target:  5'- cGCgCGCGGCCUgcgcgccgccgacaUCGcGGCGCGAUAcggcgccgccgGCGAg -3'
miRNA:   3'- -CG-GUGUCGGA--------------AGC-CCGCGCUAU-----------UGCU- -5'
23800 5' -55.1 NC_005261.1 + 44248 0.72 0.627469
Target:  5'- aGCgCGCGGCCgacgccgCGGcGCGCGGgggGGCGGg -3'
miRNA:   3'- -CG-GUGUCGGaa-----GCC-CGCGCUa--UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 44308 0.73 0.565877
Target:  5'- gGCCGCuGCCcgCGGGCGCcgcaGACGGg -3'
miRNA:   3'- -CGGUGuCGGaaGCCCGCGcua-UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 45646 0.68 0.847836
Target:  5'- cGCCGgAGCagugcccagCGGGCGUGAUcAACGc -3'
miRNA:   3'- -CGGUgUCGgaa------GCCCGCGCUA-UUGCu -5'
23800 5' -55.1 NC_005261.1 + 46699 0.73 0.555736
Target:  5'- cGCCACGGCaUUCGcuaGCGCGAcGACGGc -3'
miRNA:   3'- -CGGUGUCGgAAGCc--CGCGCUaUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 47609 0.66 0.922976
Target:  5'- aGCCGCccCCUgCGGGgGCGGccGCGGc -3'
miRNA:   3'- -CGGUGucGGAaGCCCgCGCUauUGCU- -5'
23800 5' -55.1 NC_005261.1 + 48699 0.74 0.515769
Target:  5'- gGCCAuCAcGCCggCGGGCGUGAUGuugcaACGGg -3'
miRNA:   3'- -CGGU-GU-CGGaaGCCCGCGCUAU-----UGCU- -5'
23800 5' -55.1 NC_005261.1 + 49253 0.66 0.917314
Target:  5'- cGCCGCGGCggcgUCGGcGCGCacguccGCGAg -3'
miRNA:   3'- -CGGUGUCGga--AGCC-CGCGcuau--UGCU- -5'
23800 5' -55.1 NC_005261.1 + 49459 0.67 0.878331
Target:  5'- cGCCGCGGaaggCGGGCGCGcaggccgcGCGGa -3'
miRNA:   3'- -CGGUGUCggaaGCCCGCGCuau-----UGCU- -5'
23800 5' -55.1 NC_005261.1 + 51200 0.68 0.855775
Target:  5'- cGCCAC-GCCccCGGGCGCGcu-GCu- -3'
miRNA:   3'- -CGGUGuCGGaaGCCCGCGCuauUGcu -5'
23800 5' -55.1 NC_005261.1 + 51421 0.71 0.689167
Target:  5'- cCCACcGCCUgcugggcccCGGGCGCGccGUGAUGAu -3'
miRNA:   3'- cGGUGuCGGAa--------GCCCGCGC--UAUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 51926 0.68 0.822855
Target:  5'- gGCCGCGGCCUggucccgcucgUCGccGGCGCcaccGACGAc -3'
miRNA:   3'- -CGGUGUCGGA-----------AGC--CCGCGcua-UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 52736 0.67 0.89888
Target:  5'- cGCCGCGGCgCgaUCGGGgaaguggccCGCGAgGACGu -3'
miRNA:   3'- -CGGUGUCG-Ga-AGCCC---------GCGCUaUUGCu -5'
23800 5' -55.1 NC_005261.1 + 53430 0.68 0.839698
Target:  5'- cGCCGuccgcCAGCCcgUCGGGCGuCGGgaggucgccgGGCGGg -3'
miRNA:   3'- -CGGU-----GUCGGa-AGCCCGC-GCUa---------UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 53559 0.68 0.822855
Target:  5'- cGCCGCGGCC--CaGGCGCacUAGCGGc -3'
miRNA:   3'- -CGGUGUCGGaaGcCCGCGcuAUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 53655 0.66 0.911409
Target:  5'- cGCagGCGGCCUggccgCGGGuCGCGGccuCGAc -3'
miRNA:   3'- -CGg-UGUCGGAa----GCCC-GCGCUauuGCU- -5'
23800 5' -55.1 NC_005261.1 + 53716 0.7 0.749117
Target:  5'- cGCCGCGGCCagcugCGGcGCGCccgcacgGGCGAg -3'
miRNA:   3'- -CGGUGUCGGaa---GCC-CGCGcua----UUGCU- -5'
23800 5' -55.1 NC_005261.1 + 54875 0.68 0.866541
Target:  5'- -gCACGGCCggaugaugcgUCGGcGCGCGcgugccgcagcgcgcGUAGCGAg -3'
miRNA:   3'- cgGUGUCGGa---------AGCC-CGCGC---------------UAUUGCU- -5'
23800 5' -55.1 NC_005261.1 + 55922 0.66 0.917314
Target:  5'- aGCCGCAGCCgccgCcGGCGCGcagccguuUGGCu- -3'
miRNA:   3'- -CGGUGUCGGaa--GcCCGCGCu-------AUUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.