miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23801 3' -61.3 NC_005261.1 + 50176 0.66 0.681663
Target:  5'- cCGCGGGcacCGCcgcAGCAGCCGGUgCa -3'
miRNA:   3'- -GCGCUCa--GCGaucUCGUCGGCCGgGc -5'
23801 3' -61.3 NC_005261.1 + 57633 0.66 0.681663
Target:  5'- -cCGGGUgGCUc-AGCAGCC-GCCCGa -3'
miRNA:   3'- gcGCUCAgCGAucUCGUCGGcCGGGC- -5'
23801 3' -61.3 NC_005261.1 + 97533 0.66 0.681663
Target:  5'- cCGCGA-UCgGCggccccGGcGguGCCGGCCCGu -3'
miRNA:   3'- -GCGCUcAG-CGa-----UCuCguCGGCCGGGC- -5'
23801 3' -61.3 NC_005261.1 + 39780 0.66 0.681663
Target:  5'- uCGagGAcGUCGCcggGGGGCGGCgCGGCCg- -3'
miRNA:   3'- -GCg-CU-CAGCGa--UCUCGUCG-GCCGGgc -5'
23801 3' -61.3 NC_005261.1 + 119581 0.66 0.681663
Target:  5'- uGCGAG-CGCgAGAccGUGGCCGcCCCGu -3'
miRNA:   3'- gCGCUCaGCGaUCU--CGUCGGCcGGGC- -5'
23801 3' -61.3 NC_005261.1 + 69757 0.66 0.680679
Target:  5'- gGCGAG-CGCggGGGGCGgcGCCGGggacugagccgcuCCCGc -3'
miRNA:   3'- gCGCUCaGCGa-UCUCGU--CGGCC-------------GGGC- -5'
23801 3' -61.3 NC_005261.1 + 44458 0.66 0.675756
Target:  5'- uGUGGGa-GCaGGAGCugcugcgcugcuucaAGCUGGCCCGg -3'
miRNA:   3'- gCGCUCagCGaUCUCG---------------UCGGCCGGGC- -5'
23801 3' -61.3 NC_005261.1 + 56527 0.66 0.671811
Target:  5'- cCGCGuucGUCGCgcGGuuCAGCCGGCUgGu -3'
miRNA:   3'- -GCGCu--CAGCGa-UCucGUCGGCCGGgC- -5'
23801 3' -61.3 NC_005261.1 + 48442 0.66 0.671811
Target:  5'- uCGCGG--UGCgUGGcGCGGCCGGCgCGg -3'
miRNA:   3'- -GCGCUcaGCG-AUCuCGUCGGCCGgGC- -5'
23801 3' -61.3 NC_005261.1 + 6432 0.66 0.671811
Target:  5'- uCGCGAGggCGgUccGGgGGCCGGCCgGg -3'
miRNA:   3'- -GCGCUCa-GCgAucUCgUCGGCCGGgC- -5'
23801 3' -61.3 NC_005261.1 + 76187 0.66 0.671811
Target:  5'- aGCGGGgccugggcgUGCUGaugcAGCAGCCGcGCCUGc -3'
miRNA:   3'- gCGCUCa--------GCGAUc---UCGUCGGC-CGGGC- -5'
23801 3' -61.3 NC_005261.1 + 19511 0.66 0.671811
Target:  5'- uGCaGGUaCGCgAGGccccGCAGCaCGGCCCGc -3'
miRNA:   3'- gCGcUCA-GCGaUCU----CGUCG-GCCGGGC- -5'
23801 3' -61.3 NC_005261.1 + 48301 0.66 0.671811
Target:  5'- aGCGAGgccUCGg-GGGGCGcGUCGGgCCCGg -3'
miRNA:   3'- gCGCUC---AGCgaUCUCGU-CGGCC-GGGC- -5'
23801 3' -61.3 NC_005261.1 + 27798 0.66 0.671811
Target:  5'- cCGuCGAGcgaGCUAGc-CAGCCGGCCgGc -3'
miRNA:   3'- -GC-GCUCag-CGAUCucGUCGGCCGGgC- -5'
23801 3' -61.3 NC_005261.1 + 129370 0.66 0.671811
Target:  5'- gCGCGGGUCGC----GCGGCUucgGGUCCa -3'
miRNA:   3'- -GCGCUCAGCGaucuCGUCGG---CCGGGc -5'
23801 3' -61.3 NC_005261.1 + 30892 0.66 0.671811
Target:  5'- cCGCccGAGcUCggGCUGGGGCcGcCCGGCCCc -3'
miRNA:   3'- -GCG--CUC-AG--CGAUCUCGuC-GGCCGGGc -5'
23801 3' -61.3 NC_005261.1 + 97689 0.66 0.66885
Target:  5'- gGCGGGgcuGCcGGGGCGGUggggagacggcgggUGGCCCGg -3'
miRNA:   3'- gCGCUCag-CGaUCUCGUCG--------------GCCGGGC- -5'
23801 3' -61.3 NC_005261.1 + 35791 0.66 0.66193
Target:  5'- cCGCGGG-CGCcaUGGcGCGGgaCGGCCUGg -3'
miRNA:   3'- -GCGCUCaGCG--AUCuCGUCg-GCCGGGC- -5'
23801 3' -61.3 NC_005261.1 + 45622 0.66 0.66193
Target:  5'- gCGCG-G-CGC-GGcGCGGCgGGCCCGc -3'
miRNA:   3'- -GCGCuCaGCGaUCuCGUCGgCCGGGC- -5'
23801 3' -61.3 NC_005261.1 + 85212 0.66 0.66193
Target:  5'- -uCGAuGUCGUccuuggAGAGCAGCCGcGCCgGc -3'
miRNA:   3'- gcGCU-CAGCGa-----UCUCGUCGGC-CGGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.