miRNA display CGI


Results 21 - 40 of 156 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23801 3' -61.3 NC_005261.1 + 2616 0.66 0.66193
Target:  5'- gGCGGGgcCGCc-GGGCGGCauggGGCCCa -3'
miRNA:   3'- gCGCUCa-GCGauCUCGUCGg---CCGGGc -5'
23801 3' -61.3 NC_005261.1 + 85212 0.66 0.66193
Target:  5'- -uCGAuGUCGUccuuggAGAGCAGCCGcGCCgGc -3'
miRNA:   3'- gcGCU-CAGCGa-----UCUCGUCGGC-CGGgC- -5'
23801 3' -61.3 NC_005261.1 + 3446 0.66 0.66193
Target:  5'- gGCGGG-CGCgcGGGCcGCCGcGCCgCGc -3'
miRNA:   3'- gCGCUCaGCGauCUCGuCGGC-CGG-GC- -5'
23801 3' -61.3 NC_005261.1 + 14961 0.66 0.66094
Target:  5'- aGCGGGcgUGcCUGGGGCGacugcgcggccgcGCCGGCCgCGc -3'
miRNA:   3'- gCGCUCa-GC-GAUCUCGU-------------CGGCCGG-GC- -5'
23801 3' -61.3 NC_005261.1 + 68104 0.66 0.652025
Target:  5'- cCGUGaAGUUcggGCUGGAGCugcGCgGGCCgCGg -3'
miRNA:   3'- -GCGC-UCAG---CGAUCUCGu--CGgCCGG-GC- -5'
23801 3' -61.3 NC_005261.1 + 118683 0.66 0.652025
Target:  5'- gGCGGG-CGCUGGcGCAcGCgCGGCgUGg -3'
miRNA:   3'- gCGCUCaGCGAUCuCGU-CG-GCCGgGC- -5'
23801 3' -61.3 NC_005261.1 + 64492 0.66 0.652025
Target:  5'- aGCGGGUgGCgc-GGguGCUcggGGCCCGc -3'
miRNA:   3'- gCGCUCAgCGaucUCguCGG---CCGGGC- -5'
23801 3' -61.3 NC_005261.1 + 39977 0.66 0.652025
Target:  5'- aGCGGGUUGCgcGcGCcGCCGGCgUGc -3'
miRNA:   3'- gCGCUCAGCGauCuCGuCGGCCGgGC- -5'
23801 3' -61.3 NC_005261.1 + 53876 0.66 0.652025
Target:  5'- gCGCGcG-CGCUGucGAGUcgaAGCgGGCCCGc -3'
miRNA:   3'- -GCGCuCaGCGAU--CUCG---UCGgCCGGGC- -5'
23801 3' -61.3 NC_005261.1 + 81452 0.66 0.642106
Target:  5'- gGCGGG-CGCcgccAGCAGCagGGCCCa -3'
miRNA:   3'- gCGCUCaGCGauc-UCGUCGg-CCGGGc -5'
23801 3' -61.3 NC_005261.1 + 74051 0.66 0.642106
Target:  5'- gCGcCGGGggGCUGcGGCAGCugcgcgacgCGGCCCGg -3'
miRNA:   3'- -GC-GCUCagCGAUcUCGUCG---------GCCGGGC- -5'
23801 3' -61.3 NC_005261.1 + 67071 0.66 0.642106
Target:  5'- gCGCGGGggcUCGCUcGGGCGGUCcauGGCgCGa -3'
miRNA:   3'- -GCGCUC---AGCGAuCUCGUCGG---CCGgGC- -5'
23801 3' -61.3 NC_005261.1 + 104323 0.66 0.642106
Target:  5'- gCGCGGacgCGCgcguccAGCGGCCGGCCg- -3'
miRNA:   3'- -GCGCUca-GCGauc---UCGUCGGCCGGgc -5'
23801 3' -61.3 NC_005261.1 + 136618 0.66 0.642106
Target:  5'- gCGCGcG-CGCgccgAGGGCGGCgggaaGGCCUGg -3'
miRNA:   3'- -GCGCuCaGCGa---UCUCGUCGg----CCGGGC- -5'
23801 3' -61.3 NC_005261.1 + 30710 0.66 0.642106
Target:  5'- cCGCGGGagccccggCGCc-GGGCcGCCaGGCCCGa -3'
miRNA:   3'- -GCGCUCa-------GCGauCUCGuCGG-CCGGGC- -5'
23801 3' -61.3 NC_005261.1 + 5162 0.66 0.642106
Target:  5'- gGCGGGcCGCgucGAGCagGGCCgGGUCCu -3'
miRNA:   3'- gCGCUCaGCGau-CUCG--UCGG-CCGGGc -5'
23801 3' -61.3 NC_005261.1 + 1066 0.66 0.632179
Target:  5'- gCGCGGGgggcuggcccCGCUccAGGGCgAGCCcGGCUCGu -3'
miRNA:   3'- -GCGCUCa---------GCGA--UCUCG-UCGG-CCGGGC- -5'
23801 3' -61.3 NC_005261.1 + 2411 0.66 0.632179
Target:  5'- cCGCGGGcccCGCgc-GGCGGCgGGCCgCGa -3'
miRNA:   3'- -GCGCUCa--GCGaucUCGUCGgCCGG-GC- -5'
23801 3' -61.3 NC_005261.1 + 85789 0.66 0.632179
Target:  5'- aCGCc-GUCGCUGG-GCAGaCGGCCg- -3'
miRNA:   3'- -GCGcuCAGCGAUCuCGUCgGCCGGgc -5'
23801 3' -61.3 NC_005261.1 + 3597 0.66 0.632179
Target:  5'- uCGCGGGcCGCgccaAGCAGCUcagcuGCCCGg -3'
miRNA:   3'- -GCGCUCaGCGauc-UCGUCGGc----CGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.