miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23801 3' -61.3 NC_005261.1 + 1066 0.66 0.632179
Target:  5'- gCGCGGGgggcuggcccCGCUccAGGGCgAGCCcGGCUCGu -3'
miRNA:   3'- -GCGCUCa---------GCGA--UCUCG-UCGG-CCGGGC- -5'
23801 3' -61.3 NC_005261.1 + 1134 0.69 0.468556
Target:  5'- aCGCGgaGGaCGCggacgaggAGAGCAcuuccacgcgcGCCGGCCCGc -3'
miRNA:   3'- -GCGC--UCaGCGa-------UCUCGU-----------CGGCCGGGC- -5'
23801 3' -61.3 NC_005261.1 + 2179 0.72 0.308219
Target:  5'- uGCGAGUcggCGCUcAGcAGCAGCCGguuGCCCa -3'
miRNA:   3'- gCGCUCA---GCGA-UC-UCGUCGGC---CGGGc -5'
23801 3' -61.3 NC_005261.1 + 2216 0.66 0.66193
Target:  5'- cCGCGAGcaggUGCgAGAGCccGCCGcGCaCCGg -3'
miRNA:   3'- -GCGCUCa---GCGaUCUCGu-CGGC-CG-GGC- -5'
23801 3' -61.3 NC_005261.1 + 2411 0.66 0.632179
Target:  5'- cCGCGGGcccCGCgc-GGCGGCgGGCCgCGa -3'
miRNA:   3'- -GCGCUCa--GCGaucUCGUCGgCCGG-GC- -5'
23801 3' -61.3 NC_005261.1 + 2507 0.67 0.622252
Target:  5'- cCGCGAGcCGCgccgcgaccucGGGGCGGCaguaGGCCg- -3'
miRNA:   3'- -GCGCUCaGCGa----------UCUCGUCGg---CCGGgc -5'
23801 3' -61.3 NC_005261.1 + 2616 0.66 0.66193
Target:  5'- gGCGGGgcCGCc-GGGCGGCauggGGCCCa -3'
miRNA:   3'- gCGCUCa-GCGauCUCGUCGg---CCGGGc -5'
23801 3' -61.3 NC_005261.1 + 3446 0.66 0.66193
Target:  5'- gGCGGG-CGCgcGGGCcGCCGcGCCgCGc -3'
miRNA:   3'- gCGCUCaGCGauCUCGuCGGC-CGG-GC- -5'
23801 3' -61.3 NC_005261.1 + 3597 0.66 0.632179
Target:  5'- uCGCGGGcCGCgccaAGCAGCUcagcuGCCCGg -3'
miRNA:   3'- -GCGCUCaGCGauc-UCGUCGGc----CGGGC- -5'
23801 3' -61.3 NC_005261.1 + 3829 0.7 0.424411
Target:  5'- cCGCGGGcccgggCGCUGGcGGCAgcggcGCCGGCgCCGc -3'
miRNA:   3'- -GCGCUCa-----GCGAUC-UCGU-----CGGCCG-GGC- -5'
23801 3' -61.3 NC_005261.1 + 3896 0.67 0.592542
Target:  5'- gGCGAG-CGCggcgcGGGCGcccgcgccGCCGGCgCCGg -3'
miRNA:   3'- gCGCUCaGCGau---CUCGU--------CGGCCG-GGC- -5'
23801 3' -61.3 NC_005261.1 + 4185 0.68 0.524444
Target:  5'- cCGCGAGcuUCGCgcucuGCAGCCaGGCCa- -3'
miRNA:   3'- -GCGCUC--AGCGaucu-CGUCGG-CCGGgc -5'
23801 3' -61.3 NC_005261.1 + 4525 0.68 0.524444
Target:  5'- gCGCGGGcgcCGCggcgAGGGC-GCCGgGCCCu -3'
miRNA:   3'- -GCGCUCa--GCGa---UCUCGuCGGC-CGGGc -5'
23801 3' -61.3 NC_005261.1 + 5162 0.66 0.642106
Target:  5'- gGCGGGcCGCgucGAGCagGGCCgGGUCCu -3'
miRNA:   3'- gCGCUCaGCGau-CUCG--UCGG-CCGGGc -5'
23801 3' -61.3 NC_005261.1 + 6193 0.67 0.57286
Target:  5'- uGCGAGg-GCgGGccCAGCUGGCCCGc -3'
miRNA:   3'- gCGCUCagCGaUCucGUCGGCCGGGC- -5'
23801 3' -61.3 NC_005261.1 + 6432 0.66 0.671811
Target:  5'- uCGCGAGggCGgUccGGgGGCCGGCCgGg -3'
miRNA:   3'- -GCGCUCa-GCgAucUCgUCGGCCGGgC- -5'
23801 3' -61.3 NC_005261.1 + 9790 0.67 0.612333
Target:  5'- cCGCGAGgugagcccaccccaGCUGgcccagcccagcGAGCccacccuAGCCGGCCCGc -3'
miRNA:   3'- -GCGCUCag------------CGAU------------CUCG-------UCGGCCGGGC- -5'
23801 3' -61.3 NC_005261.1 + 10024 0.7 0.433043
Target:  5'- gGCGGGccUCGCgucgGGGGCGcucgcucaCCGGCCCGa -3'
miRNA:   3'- gCGCUC--AGCGa---UCUCGUc-------GGCCGGGC- -5'
23801 3' -61.3 NC_005261.1 + 10450 0.73 0.290728
Target:  5'- uGgGAGgCGCUGcugcagcucucgcccGAGCAgGCCGGCCCGc -3'
miRNA:   3'- gCgCUCaGCGAU---------------CUCGU-CGGCCGGGC- -5'
23801 3' -61.3 NC_005261.1 + 11470 0.71 0.363881
Target:  5'- aGCGGG-CGCggaggggcggggcGGGGguGCCGGCUCGa -3'
miRNA:   3'- gCGCUCaGCGa------------UCUCguCGGCCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.