miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23801 3' -61.3 NC_005261.1 + 50176 0.66 0.681663
Target:  5'- cCGCGGGcacCGCcgcAGCAGCCGGUgCa -3'
miRNA:   3'- -GCGCUCa--GCGaucUCGUCGGCCGgGc -5'
23801 3' -61.3 NC_005261.1 + 10450 0.73 0.290728
Target:  5'- uGgGAGgCGCUGcugcagcucucgcccGAGCAgGCCGGCCCGc -3'
miRNA:   3'- gCgCUCaGCGAU---------------CUCGU-CGGCCGGGC- -5'
23801 3' -61.3 NC_005261.1 + 2179 0.72 0.308219
Target:  5'- uGCGAGUcggCGCUcAGcAGCAGCCGguuGCCCa -3'
miRNA:   3'- gCGCUCA---GCGA-UC-UCGUCGGC---CGGGc -5'
23801 3' -61.3 NC_005261.1 + 112681 0.72 0.322212
Target:  5'- gCGCGAGggGCUGGGcGUcgaGGCCGuGCCCGu -3'
miRNA:   3'- -GCGCUCagCGAUCU-CG---UCGGC-CGGGC- -5'
23801 3' -61.3 NC_005261.1 + 23788 0.72 0.329384
Target:  5'- gGUGGGcUCGCcGGGGCAgGCCGGCUgGg -3'
miRNA:   3'- gCGCUC-AGCGaUCUCGU-CGGCCGGgC- -5'
23801 3' -61.3 NC_005261.1 + 23845 0.72 0.329384
Target:  5'- gGUGGGcUCGCcGGGGCAgGCCGGCUgGg -3'
miRNA:   3'- gCGCUC-AGCGaUCUCGU-CGGCCGGgC- -5'
23801 3' -61.3 NC_005261.1 + 115400 0.72 0.336674
Target:  5'- aGCGGGUCGUcgaccgcgGGcGGCAGCCggggccgcGGCCCGa -3'
miRNA:   3'- gCGCUCAGCGa-------UC-UCGUCGG--------CCGGGC- -5'
23801 3' -61.3 NC_005261.1 + 29397 0.71 0.359243
Target:  5'- cCGCGAGgcggccgcgCGCUAcgcGGCGGCCgcggGGCCCGc -3'
miRNA:   3'- -GCGCUCa--------GCGAUc--UCGUCGG----CCGGGC- -5'
23801 3' -61.3 NC_005261.1 + 11470 0.71 0.363881
Target:  5'- aGCGGG-CGCggaggggcggggcGGGGguGCCGGCUCGa -3'
miRNA:   3'- gCGCUCaGCGa------------UCUCguCGGCCGGGC- -5'
23801 3' -61.3 NC_005261.1 + 34924 0.73 0.288107
Target:  5'- gCGCGGccaCGCggGGGGCGGCCGGCgCGa -3'
miRNA:   3'- -GCGCUca-GCGa-UCUCGUCGGCCGgGC- -5'
23801 3' -61.3 NC_005261.1 + 60387 0.73 0.275282
Target:  5'- gGCGAGgugCGCcuccaUGGcGCcgGGCCGGCCCGg -3'
miRNA:   3'- gCGCUCa--GCG-----AUCuCG--UCGGCCGGGC- -5'
23801 3' -61.3 NC_005261.1 + 58164 0.73 0.275282
Target:  5'- gCGCGAGUCGCUgcgcacgaGGuGCAGgCaGCCCa -3'
miRNA:   3'- -GCGCUCAGCGA--------UCuCGUCgGcCGGGc -5'
23801 3' -61.3 NC_005261.1 + 29957 0.75 0.20777
Target:  5'- cCGCGAGgCGCUAGAgGCGGCgCGGUgCGc -3'
miRNA:   3'- -GCGCUCaGCGAUCU-CGUCG-GCCGgGC- -5'
23801 3' -61.3 NC_005261.1 + 92159 0.75 0.212801
Target:  5'- gGCGAGcgcgCGCUcgguGGAGCcGCCGgGCCCGa -3'
miRNA:   3'- gCGCUCa---GCGA----UCUCGuCGGC-CGGGC- -5'
23801 3' -61.3 NC_005261.1 + 135311 0.75 0.212801
Target:  5'- gGCGuGUCGCccuGGGCGGCCgugcuggacuuuGGCCCGg -3'
miRNA:   3'- gCGCuCAGCGau-CUCGUCGG------------CCGGGC- -5'
23801 3' -61.3 NC_005261.1 + 134212 0.75 0.217937
Target:  5'- gCGCGGGUCGC---GGCGGCCGGCagCGu -3'
miRNA:   3'- -GCGCUCAGCGaucUCGUCGGCCGg-GC- -5'
23801 3' -61.3 NC_005261.1 + 67432 0.75 0.228526
Target:  5'- cCGCGGccagCGCccaaAGGGCAGCCGGUCCGc -3'
miRNA:   3'- -GCGCUca--GCGa---UCUCGUCGGCCGGGC- -5'
23801 3' -61.3 NC_005261.1 + 44199 0.74 0.251008
Target:  5'- aGCGAG-CGCgAGcuGCAGgCGGCCCGg -3'
miRNA:   3'- gCGCUCaGCGaUCu-CGUCgGCCGGGC- -5'
23801 3' -61.3 NC_005261.1 + 118367 0.74 0.251008
Target:  5'- gGcCGGG-CGCUGGGGC-GCgCGGCCCGa -3'
miRNA:   3'- gC-GCUCaGCGAUCUCGuCG-GCCGGGC- -5'
23801 3' -61.3 NC_005261.1 + 90073 0.74 0.262917
Target:  5'- cCGCGGG-CGCcgAGGGCAGCgacgggGGCCCGu -3'
miRNA:   3'- -GCGCUCaGCGa-UCUCGUCGg-----CCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.