miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23802 5' -57.9 NC_005261.1 + 31849 0.66 0.822328
Target:  5'- gCUGGccuCGCGGcGCGUCUUCGGGcccGGCg- -3'
miRNA:   3'- -GACCu--GCGCC-UGCGGAAGCUC---CUGaa -5'
23802 5' -57.9 NC_005261.1 + 135808 0.66 0.822328
Target:  5'- gUGGGCGac-GCGCCgUUCGAGGAgUa -3'
miRNA:   3'- gACCUGCgccUGCGG-AAGCUCCUgAa -5'
23802 5' -57.9 NC_005261.1 + 13071 0.66 0.822328
Target:  5'- -cGGGCGCGucCGCCggcccgUCGGcGGGCg- -3'
miRNA:   3'- gaCCUGCGCcuGCGGa-----AGCU-CCUGaa -5'
23802 5' -57.9 NC_005261.1 + 80066 0.66 0.822328
Target:  5'- -cGGGCGCGGGgGgCgUgGGGGACg- -3'
miRNA:   3'- gaCCUGCGCCUgCgGaAgCUCCUGaa -5'
23802 5' -57.9 NC_005261.1 + 75059 0.66 0.822328
Target:  5'- aUGGuguacacCGCGcGCGCCggCGGGGGCUc -3'
miRNA:   3'- gACCu------GCGCcUGCGGaaGCUCCUGAa -5'
23802 5' -57.9 NC_005261.1 + 127768 0.66 0.822328
Target:  5'- -cGGGCGCGaaGACGCCcggcugcUCGAGcGGCg- -3'
miRNA:   3'- gaCCUGCGC--CUGCGGa------AGCUC-CUGaa -5'
23802 5' -57.9 NC_005261.1 + 10260 0.66 0.813732
Target:  5'- -cGGGC-CuGGCGCCUUCugcccuGAGGACUg -3'
miRNA:   3'- gaCCUGcGcCUGCGGAAG------CUCCUGAa -5'
23802 5' -57.9 NC_005261.1 + 10619 0.66 0.813732
Target:  5'- -aGGACGacuacgaGGACGaCUaCGAGGACg- -3'
miRNA:   3'- gaCCUGCg------CCUGCgGAaGCUCCUGaa -5'
23802 5' -57.9 NC_005261.1 + 74578 0.66 0.813732
Target:  5'- -cGGuCGCGGaccGCGUCUUCGugccGGACg- -3'
miRNA:   3'- gaCCuGCGCC---UGCGGAAGCu---CCUGaa -5'
23802 5' -57.9 NC_005261.1 + 118825 0.66 0.811993
Target:  5'- cCUGGGCGCGGcACuGCCgcucugcggcgCGgAGGGCg- -3'
miRNA:   3'- -GACCUGCGCC-UG-CGGaa---------GC-UCCUGaa -5'
23802 5' -57.9 NC_005261.1 + 134288 0.66 0.804973
Target:  5'- uCUGGGCGUGGGuccacgucgcCGCCUUCGccgcgcuGGAgCUg -3'
miRNA:   3'- -GACCUGCGCCU----------GCGGAAGCu------CCU-GAa -5'
23802 5' -57.9 NC_005261.1 + 81208 0.66 0.793354
Target:  5'- -cGGGCGCGagccggaccaccguGGCGCC--CGAGGGCg- -3'
miRNA:   3'- gaCCUGCGC--------------CUGCGGaaGCUCCUGaa -5'
23802 5' -57.9 NC_005261.1 + 28877 0.66 0.793354
Target:  5'- gCUGcGGCGCGGACGCCgccgCcugcgcccaacgcgGAGGAa-- -3'
miRNA:   3'- -GAC-CUGCGCCUGCGGaa--G--------------CUCCUgaa -5'
23802 5' -57.9 NC_005261.1 + 118013 0.66 0.786995
Target:  5'- gCUGGACGCugucGGACGCacgCGGGGcCc- -3'
miRNA:   3'- -GACCUGCG----CCUGCGgaaGCUCCuGaa -5'
23802 5' -57.9 NC_005261.1 + 31431 0.66 0.786995
Target:  5'- -gGGAgGCGcuggcGGCGCCgcccggCGAGGACg- -3'
miRNA:   3'- gaCCUgCGC-----CUGCGGaa----GCUCCUGaa -5'
23802 5' -57.9 NC_005261.1 + 82283 0.67 0.777794
Target:  5'- gCUGGuCGCGGAUGCagcgccCGAGG-CUg -3'
miRNA:   3'- -GACCuGCGCCUGCGgaa---GCUCCuGAa -5'
23802 5' -57.9 NC_005261.1 + 105126 0.67 0.772211
Target:  5'- -cGGGCGCGGGcCGCCggcgcgcgcagguccUcgcggcUCGAGGGCg- -3'
miRNA:   3'- gaCCUGCGCCU-GCGG---------------A------AGCUCCUGaa -5'
23802 5' -57.9 NC_005261.1 + 29350 0.67 0.768464
Target:  5'- -gGcGGCGCGGGCGacaCUcgCGAGGGCc- -3'
miRNA:   3'- gaC-CUGCGCCUGCg--GAa-GCUCCUGaa -5'
23802 5' -57.9 NC_005261.1 + 44312 0.67 0.759013
Target:  5'- gCUGccCGCGGGCGCCgcagacgGGGGGCUg -3'
miRNA:   3'- -GACcuGCGCCUGCGGaag----CUCCUGAa -5'
23802 5' -57.9 NC_005261.1 + 111444 0.67 0.759013
Target:  5'- -cGGACGaccggcgagcCGGGCGCCggCGAGGcCa- -3'
miRNA:   3'- gaCCUGC----------GCCUGCGGaaGCUCCuGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.