miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23802 5' -57.9 NC_005261.1 + 1113 0.72 0.480411
Target:  5'- -aGGACGCGGACGaCgagGAGGACg- -3'
miRNA:   3'- gaCCUGCGCCUGCgGaagCUCCUGaa -5'
23802 5' -57.9 NC_005261.1 + 2559 0.68 0.720187
Target:  5'- gCUGGGCGCGGGCGUgUgguacucccCGGGcGGCa- -3'
miRNA:   3'- -GACCUGCGCCUGCGgAa--------GCUC-CUGaa -5'
23802 5' -57.9 NC_005261.1 + 4524 0.74 0.358596
Target:  5'- ---cGCGCGGGCGCCgcggCGAGGGCg- -3'
miRNA:   3'- gaccUGCGCCUGCGGaa--GCUCCUGaa -5'
23802 5' -57.9 NC_005261.1 + 10260 0.66 0.813732
Target:  5'- -cGGGC-CuGGCGCCUUCugcccuGAGGACUg -3'
miRNA:   3'- gaCCUGcGcCUGCGGAAG------CUCCUGAa -5'
23802 5' -57.9 NC_005261.1 + 10619 0.66 0.813732
Target:  5'- -aGGACGacuacgaGGACGaCUaCGAGGACg- -3'
miRNA:   3'- gaCCUGCg------CCUGCgGAaGCUCCUGaa -5'
23802 5' -57.9 NC_005261.1 + 11472 0.68 0.724133
Target:  5'- -cGGGCGCGGAggggcggggcgggggUGCCggcUCGAGG-CUUc -3'
miRNA:   3'- gaCCUGCGCCU---------------GCGGa--AGCUCCuGAA- -5'
23802 5' -57.9 NC_005261.1 + 13071 0.66 0.822328
Target:  5'- -cGGGCGCGucCGCCggcccgUCGGcGGGCg- -3'
miRNA:   3'- gaCCUGCGCcuGCGGa-----AGCU-CCUGaa -5'
23802 5' -57.9 NC_005261.1 + 16175 0.67 0.730029
Target:  5'- -gGGGCGCGGGCGUgg-CGGGGGu-- -3'
miRNA:   3'- gaCCUGCGCCUGCGgaaGCUCCUgaa -5'
23802 5' -57.9 NC_005261.1 + 28877 0.66 0.793354
Target:  5'- gCUGcGGCGCGGACGCCgccgCcugcgcccaacgcgGAGGAa-- -3'
miRNA:   3'- -GAC-CUGCGCCUGCGGaa--G--------------CUCCUgaa -5'
23802 5' -57.9 NC_005261.1 + 29350 0.67 0.768464
Target:  5'- -gGcGGCGCGGGCGacaCUcgCGAGGGCc- -3'
miRNA:   3'- gaC-CUGCGCCUGCg--GAa-GCUCCUGaa -5'
23802 5' -57.9 NC_005261.1 + 31431 0.66 0.786995
Target:  5'- -gGGAgGCGcuggcGGCGCCgcccggCGAGGACg- -3'
miRNA:   3'- gaCCUgCGC-----CUGCGGaa----GCUCCUGaa -5'
23802 5' -57.9 NC_005261.1 + 31849 0.66 0.822328
Target:  5'- gCUGGccuCGCGGcGCGUCUUCGGGcccGGCg- -3'
miRNA:   3'- -GACCu--GCGCC-UGCGGAAGCUC---CUGaa -5'
23802 5' -57.9 NC_005261.1 + 32348 0.7 0.598748
Target:  5'- -gGGACGCGGACcaggGCCcgCGGGaGACg- -3'
miRNA:   3'- gaCCUGCGCCUG----CGGaaGCUC-CUGaa -5'
23802 5' -57.9 NC_005261.1 + 34220 0.68 0.670032
Target:  5'- -cGGACGCGGACGCagacgCGgccgucaucuGGGGCg- -3'
miRNA:   3'- gaCCUGCGCCUGCGgaa--GC----------UCCUGaa -5'
23802 5' -57.9 NC_005261.1 + 35784 0.67 0.749451
Target:  5'- -aGGAggccCGCGGGCGCCauggCGcGGGACg- -3'
miRNA:   3'- gaCCU----GCGCCUGCGGaa--GC-UCCUGaa -5'
23802 5' -57.9 NC_005261.1 + 37992 0.72 0.480411
Target:  5'- gUGGACGCGcuacgcGGCGCC--CGAGGACg- -3'
miRNA:   3'- gACCUGCGC------CUGCGGaaGCUCCUGaa -5'
23802 5' -57.9 NC_005261.1 + 44312 0.67 0.759013
Target:  5'- gCUGccCGCGGGCGCCgcagacgGGGGGCUg -3'
miRNA:   3'- -GACcuGCGCCUGCGGaag----CUCCUGAa -5'
23802 5' -57.9 NC_005261.1 + 51979 0.75 0.306326
Target:  5'- gCUGGAcCGCGG-CGCCgccgccgacUUCGAGGACg- -3'
miRNA:   3'- -GACCU-GCGCCuGCGG---------AAGCUCCUGaa -5'
23802 5' -57.9 NC_005261.1 + 61405 0.68 0.670032
Target:  5'- -cGGGCGCguGGugGCC-UCGcAGGACc- -3'
miRNA:   3'- gaCCUGCG--CCugCGGaAGC-UCCUGaa -5'
23802 5' -57.9 NC_005261.1 + 68235 0.69 0.639502
Target:  5'- cCUGacGGCGgGGGCGUgUUCGuGGACUg -3'
miRNA:   3'- -GAC--CUGCgCCUGCGgAAGCuCCUGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.