miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23803 3' -53.3 NC_005261.1 + 58358 0.66 0.979336
Target:  5'- cGGCcaguccAGGuGUGCGGCGACGuCGGc-- -3'
miRNA:   3'- -CCGc-----UCCuCACGCUGCUGCuGUUacc -5'
23803 3' -53.3 NC_005261.1 + 1294 0.66 0.979336
Target:  5'- cGGCGGGGcucccGUcGcCGGCGGCGGCAc--- -3'
miRNA:   3'- -CCGCUCCu----CA-C-GCUGCUGCUGUuacc -5'
23803 3' -53.3 NC_005261.1 + 30445 0.66 0.979336
Target:  5'- aGGaCGGGGAG---GACGAgGACGggGGg -3'
miRNA:   3'- -CC-GCUCCUCacgCUGCUgCUGUuaCC- -5'
23803 3' -53.3 NC_005261.1 + 42930 0.66 0.97911
Target:  5'- gGGCGAGuGGGUGCGGauccaccCGACGcCGc--- -3'
miRNA:   3'- -CCGCUC-CUCACGCU-------GCUGCuGUuacc -5'
23803 3' -53.3 NC_005261.1 + 132610 0.66 0.97911
Target:  5'- cGGCGAgccgccaGGGGgcgcugGCGcCGAgGACGcgGGc -3'
miRNA:   3'- -CCGCU-------CCUCa-----CGCuGCUgCUGUuaCC- -5'
23803 3' -53.3 NC_005261.1 + 103857 0.66 0.977002
Target:  5'- cGCGAGcc--GCGGCGGCGGCGG-GGc -3'
miRNA:   3'- cCGCUCcucaCGCUGCUGCUGUUaCC- -5'
23803 3' -53.3 NC_005261.1 + 20562 0.66 0.977002
Target:  5'- cGGCGGGcugcgcAGcgGCGcCGGCGGCGcgGGu -3'
miRNA:   3'- -CCGCUCc-----UCa-CGCuGCUGCUGUuaCC- -5'
23803 3' -53.3 NC_005261.1 + 123163 0.66 0.977002
Target:  5'- gGGCGGGGcGGgcgcGCgGGCGugGugGcUGGu -3'
miRNA:   3'- -CCGCUCC-UCa---CG-CUGCugCugUuACC- -5'
23803 3' -53.3 NC_005261.1 + 613 0.66 0.977002
Target:  5'- gGGCGAgugcccgacgcaGGGGaUGUGGCGGCGGCc---- -3'
miRNA:   3'- -CCGCU------------CCUC-ACGCUGCUGCUGuuacc -5'
23803 3' -53.3 NC_005261.1 + 25776 0.66 0.977002
Target:  5'- uGGgGAGGAcaagGCGGCGAgcAgGAUGGa -3'
miRNA:   3'- -CCgCUCCUca--CGCUGCUgcUgUUACC- -5'
23803 3' -53.3 NC_005261.1 + 137090 0.66 0.976759
Target:  5'- cGGCGcAGGAGcuaGUGggagcggacccgcGCGGCGGCGuuuuGUGGa -3'
miRNA:   3'- -CCGC-UCCUCa--CGC-------------UGCUGCUGU----UACC- -5'
23803 3' -53.3 NC_005261.1 + 73591 0.66 0.974481
Target:  5'- cGCGGcGGAG-GCGGCGGCcGCGAg-- -3'
miRNA:   3'- cCGCU-CCUCaCGCUGCUGcUGUUacc -5'
23803 3' -53.3 NC_005261.1 + 22572 0.66 0.974481
Target:  5'- aGGgGAGGGGgagaGCGGCGgagGCGGCGc--- -3'
miRNA:   3'- -CCgCUCCUCa---CGCUGC---UGCUGUuacc -5'
23803 3' -53.3 NC_005261.1 + 55218 0.66 0.974481
Target:  5'- cGGCGGcccGAGgcgGCGAgGGCGGCAGc-- -3'
miRNA:   3'- -CCGCUc--CUCa--CGCUgCUGCUGUUacc -5'
23803 3' -53.3 NC_005261.1 + 13108 0.66 0.971765
Target:  5'- cGGCucGGGG-GCGuCGGCGGcCGcgGGg -3'
miRNA:   3'- -CCGcuCCUCaCGCuGCUGCU-GUuaCC- -5'
23803 3' -53.3 NC_005261.1 + 29789 0.66 0.971765
Target:  5'- uGGCcuacccGGAGgccgGCGcCGGCGGCGcgGGc -3'
miRNA:   3'- -CCGcu----CCUCa---CGCuGCUGCUGUuaCC- -5'
23803 3' -53.3 NC_005261.1 + 23036 0.66 0.971765
Target:  5'- uGCcGGGAG-GgGACGGCGGCAGc-- -3'
miRNA:   3'- cCGcUCCUCaCgCUGCUGCUGUUacc -5'
23803 3' -53.3 NC_005261.1 + 22915 0.66 0.971765
Target:  5'- -aCGAGGAcgaCGAgGACGACGAUGa -3'
miRNA:   3'- ccGCUCCUcacGCUgCUGCUGUUACc -5'
23803 3' -53.3 NC_005261.1 + 33589 0.66 0.971765
Target:  5'- cGCGAGcaccaGGG-GCGGCGcCGGCGcgGGc -3'
miRNA:   3'- cCGCUC-----CUCaCGCUGCuGCUGUuaCC- -5'
23803 3' -53.3 NC_005261.1 + 22745 0.66 0.968847
Target:  5'- gGGCGcGGGGcgGCGGCGGCccacGCGucUGGg -3'
miRNA:   3'- -CCGCuCCUCa-CGCUGCUGc---UGUu-ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.