miRNA display CGI


Results 41 - 60 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23803 5' -63.2 NC_005261.1 + 3517 0.66 0.606474
Target:  5'- cGGCCGCCuccagCGcGGCgGCCGCCUCg- -3'
miRNA:   3'- -CUGGCGGca---GCaCUGgUGGCGGGGgg -5'
23803 5' -63.2 NC_005261.1 + 95 0.66 0.596804
Target:  5'- gGGCgCGCCccCG-GGCC-CCGCCgCCCg -3'
miRNA:   3'- -CUG-GCGGcaGCaCUGGuGGCGGgGGG- -5'
23803 5' -63.2 NC_005261.1 + 35019 0.66 0.606474
Target:  5'- cGGCCGgCGUCucggucgcUGGCgCGCCGCCCUa- -3'
miRNA:   3'- -CUGGCgGCAGc-------ACUG-GUGGCGGGGgg -5'
23803 5' -63.2 NC_005261.1 + 68644 0.66 0.567958
Target:  5'- cGACCGagguCaUCGUcACCGCCGCCCgCgCCg -3'
miRNA:   3'- -CUGGCg---GcAGCAcUGGUGGCGGG-G-GG- -5'
23803 5' -63.2 NC_005261.1 + 199 0.66 0.567958
Target:  5'- gGGCCaGCgGU----GCCGCCGCCgCCCCu -3'
miRNA:   3'- -CUGG-CGgCAgcacUGGUGGCGG-GGGG- -5'
23803 5' -63.2 NC_005261.1 + 32414 0.67 0.520758
Target:  5'- uGCCGCCGcCGgcGACgGgaGCCCCgCCg -3'
miRNA:   3'- cUGGCGGCaGCa-CUGgUggCGGGG-GG- -5'
23803 5' -63.2 NC_005261.1 + 31694 0.67 0.511495
Target:  5'- cGGCgGCUGaUCGUGAUCgacGCCGUggaCCCCg -3'
miRNA:   3'- -CUGgCGGC-AGCACUGG---UGGCGg--GGGG- -5'
23803 5' -63.2 NC_005261.1 + 9333 0.67 0.520758
Target:  5'- cGCCGCCGaCGagcccaccggGAgCACCGCCgacgauCCCCg -3'
miRNA:   3'- cUGGCGGCaGCa---------CUgGUGGCGG------GGGG- -5'
23803 5' -63.2 NC_005261.1 + 39526 0.67 0.520758
Target:  5'- gGGCCGCgCGccucuaCGcGGCCGCCaGCCCCgCg -3'
miRNA:   3'- -CUGGCG-GCa-----GCaCUGGUGG-CGGGGgG- -5'
23803 5' -63.2 NC_005261.1 + 59722 0.67 0.520758
Target:  5'- -cCCGCCGggcggcagCGgcgGcgcGCgGCCGCCCUCCa -3'
miRNA:   3'- cuGGCGGCa-------GCa--C---UGgUGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 54091 0.67 0.511495
Target:  5'- gGACCGCCacGUUGccGAUgGCCGCCCgCa -3'
miRNA:   3'- -CUGGCGG--CAGCa-CUGgUGGCGGGgGg -5'
23803 5' -63.2 NC_005261.1 + 41065 0.67 0.520758
Target:  5'- aGCCGgCGgcgCG-GuCCGCCGCcagCCCCCg -3'
miRNA:   3'- cUGGCgGCa--GCaCuGGUGGCG---GGGGG- -5'
23803 5' -63.2 NC_005261.1 + 1335 0.67 0.520758
Target:  5'- cGCCGCCGcgccgCGccUGcACCAgCGUCUCCCg -3'
miRNA:   3'- cUGGCGGCa----GC--AC-UGGUgGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 131098 0.67 0.511495
Target:  5'- --aCGCCGUCGccgcGCCGCCcaaCCCCUCa -3'
miRNA:   3'- cugGCGGCAGCac--UGGUGGc--GGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 42681 0.67 0.511495
Target:  5'- gGGCCGCCGcCGgcaGCCGCgCGgCCgCCa -3'
miRNA:   3'- -CUGGCGGCaGCac-UGGUG-GCgGGgGG- -5'
23803 5' -63.2 NC_005261.1 + 77950 0.67 0.548921
Target:  5'- -cCCGCCuUCGcGGCCGCgcagcaccaccUGCCCCCa -3'
miRNA:   3'- cuGGCGGcAGCaCUGGUG-----------GCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 69622 0.67 0.558417
Target:  5'- cGCCGcCCGgcacggCGUGcgcuACCugCGCgCCCUCg -3'
miRNA:   3'- cUGGC-GGCa-----GCAC----UGGugGCG-GGGGG- -5'
23803 5' -63.2 NC_005261.1 + 81200 0.67 0.558417
Target:  5'- cGGCCGCgCGggcgCGagccgGACCACCGUggCgCCCg -3'
miRNA:   3'- -CUGGCG-GCa---GCa----CUGGUGGCG--GgGGG- -5'
23803 5' -63.2 NC_005261.1 + 47590 0.67 0.558417
Target:  5'- aGCCGCgCGcgCGcGAgggaGCCGCCCCCUg -3'
miRNA:   3'- cUGGCG-GCa-GCaCUgg--UGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 103450 0.67 0.558417
Target:  5'- -cUCGCgGUCG--GCCGCCGCgCCCg -3'
miRNA:   3'- cuGGCGgCAGCacUGGUGGCGgGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.