miRNA display CGI


Results 41 - 60 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23803 5' -63.2 NC_005261.1 + 106319 0.73 0.236618
Target:  5'- -uCUuCCGUCGUGAgCCACgGCCCCgCCg -3'
miRNA:   3'- cuGGcGGCAGCACU-GGUGgCGGGG-GG- -5'
23803 5' -63.2 NC_005261.1 + 83940 0.73 0.236618
Target:  5'- cGGCCGCCaUCGcUGuCC-CCGCCCCaCCc -3'
miRNA:   3'- -CUGGCGGcAGC-ACuGGuGGCGGGG-GG- -5'
23803 5' -63.2 NC_005261.1 + 7480 0.73 0.242107
Target:  5'- -uCCGCgGUCuuaucACCGCUGCCCCCCu -3'
miRNA:   3'- cuGGCGgCAGcac--UGGUGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 110142 0.73 0.242107
Target:  5'- -cCCGCCGaCGUcaucggcauGGCCGCCgccaccgcGCCCCCCg -3'
miRNA:   3'- cuGGCGGCaGCA---------CUGGUGG--------CGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 48829 0.73 0.247701
Target:  5'- --aCGCCGUCGUcGGCC-CCGCCgCCg -3'
miRNA:   3'- cugGCGGCAGCA-CUGGuGGCGGgGGg -5'
23803 5' -63.2 NC_005261.1 + 45385 0.73 0.257455
Target:  5'- gGGCCGCCcuguucgugcagcuGUCGUGccugcugcggcGCCugCGCCCgCCg -3'
miRNA:   3'- -CUGGCGG--------------CAGCAC-----------UGGugGCGGGgGG- -5'
23803 5' -63.2 NC_005261.1 + 39599 0.73 0.259209
Target:  5'- cGAgCGCCGcgCGcccCCGCCGCCCCCg -3'
miRNA:   3'- -CUgGCGGCa-GCacuGGUGGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 82457 0.73 0.259209
Target:  5'- cGCCGCCGUUGccgcccccGGCC-CCGUCCCCg -3'
miRNA:   3'- cUGGCGGCAGCa-------CUGGuGGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 93806 0.72 0.265125
Target:  5'- cGCCGCCG-CGc-GCCGCCGCCaCCgCCg -3'
miRNA:   3'- cUGGCGGCaGCacUGGUGGCGG-GG-GG- -5'
23803 5' -63.2 NC_005261.1 + 32313 0.72 0.265125
Target:  5'- cGCCGCCGcCGcGGCCGCgGCgCCCg -3'
miRNA:   3'- cUGGCGGCaGCaCUGGUGgCGgGGGg -5'
23803 5' -63.2 NC_005261.1 + 7454 0.72 0.271151
Target:  5'- -uCCGCCaUUGUuGCCGCCcCCCCCCa -3'
miRNA:   3'- cuGGCGGcAGCAcUGGUGGcGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 21779 0.72 0.271151
Target:  5'- aGCCGCCG-CGgcgcgGGCCGCCGCagCCgCCg -3'
miRNA:   3'- cUGGCGGCaGCa----CUGGUGGCGg-GG-GG- -5'
23803 5' -63.2 NC_005261.1 + 10680 0.72 0.276667
Target:  5'- uGCCGCCGUCcccucccggcaaaGgcguucgcgGGCCGCCuccggGCCCCCCu -3'
miRNA:   3'- cUGGCGGCAG-------------Ca--------CUGGUGG-----CGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 2755 0.72 0.277286
Target:  5'- gGGCCGUCG-CGgcgGGCCucgaggcCCGCCCCCg -3'
miRNA:   3'- -CUGGCGGCaGCa--CUGGu------GGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 73448 0.72 0.277286
Target:  5'- aGGCCgGCCG-CGUccgcGuCCGCgCGCCCCCCc -3'
miRNA:   3'- -CUGG-CGGCaGCA----CuGGUG-GCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 68533 0.72 0.277286
Target:  5'- cGCCGCCGgCGc--CCGCgCGCCCCCUg -3'
miRNA:   3'- cUGGCGGCaGCacuGGUG-GCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 93243 0.72 0.277286
Target:  5'- cGGCCGCCGUCGccuucGACCGgCGCgccagcgcgcgCCUCCa -3'
miRNA:   3'- -CUGGCGGCAGCa----CUGGUgGCG-----------GGGGG- -5'
23803 5' -63.2 NC_005261.1 + 89402 0.72 0.281019
Target:  5'- uGCCGCCGgccuuccucggcgCGUGcgcgGCCGCCggGCUCCCCg -3'
miRNA:   3'- cUGGCGGCa------------GCAC----UGGUGG--CGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 66022 0.72 0.283531
Target:  5'- cACCGCCGgcgCGUcguagucggcGGCCACgGCCagCCCCg -3'
miRNA:   3'- cUGGCGGCa--GCA----------CUGGUGgCGG--GGGG- -5'
23803 5' -63.2 NC_005261.1 + 786 0.72 0.283531
Target:  5'- -cCCGCCcccccccCGc-GCCGCCGCCCCCCa -3'
miRNA:   3'- cuGGCGGca-----GCacUGGUGGCGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.