miRNA display CGI


Results 41 - 60 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23803 5' -63.2 NC_005261.1 + 86619 0.66 0.567958
Target:  5'- cGCCGCCGUCGU--CCACC-UCCgUCa -3'
miRNA:   3'- cUGGCGGCAGCAcuGGUGGcGGGgGG- -5'
23803 5' -63.2 NC_005261.1 + 97509 0.66 0.567958
Target:  5'- gGGCCGCCGgaaCGUuucGGCuCGCCGCgaucggcggCCCCg -3'
miRNA:   3'- -CUGGCGGCa--GCA---CUG-GUGGCG---------GGGGg -5'
23803 5' -63.2 NC_005261.1 + 199 0.66 0.567958
Target:  5'- gGGCCaGCgGU----GCCGCCGCCgCCCCu -3'
miRNA:   3'- -CUGG-CGgCAgcacUGGUGGCGG-GGGG- -5'
23803 5' -63.2 NC_005261.1 + 135577 0.66 0.567958
Target:  5'- gGACC-CCaUCGUGGCCACgGCCggCgCCg -3'
miRNA:   3'- -CUGGcGGcAGCACUGGUGgCGG--GgGG- -5'
23803 5' -63.2 NC_005261.1 + 68644 0.66 0.567958
Target:  5'- cGACCGagguCaUCGUcACCGCCGCCCgCgCCg -3'
miRNA:   3'- -CUGGCg---GcAGCAcUGGUGGCGGG-G-GG- -5'
23803 5' -63.2 NC_005261.1 + 103450 0.67 0.558417
Target:  5'- -cUCGCgGUCG--GCCGCCGCgCCCg -3'
miRNA:   3'- cuGGCGgCAGCacUGGUGGCGgGGGg -5'
23803 5' -63.2 NC_005261.1 + 81200 0.67 0.558417
Target:  5'- cGGCCGCgCGggcgCGagccgGACCACCGUggCgCCCg -3'
miRNA:   3'- -CUGGCG-GCa---GCa----CUGGUGGCG--GgGGG- -5'
23803 5' -63.2 NC_005261.1 + 47590 0.67 0.558417
Target:  5'- aGCCGCgCGcgCGcGAgggaGCCGCCCCCUg -3'
miRNA:   3'- cUGGCG-GCa-GCaCUgg--UGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 132968 0.67 0.558417
Target:  5'- uGGCCGCCuUCGUcGCCgcgcACCGCgaCCCg -3'
miRNA:   3'- -CUGGCGGcAGCAcUGG----UGGCGggGGG- -5'
23803 5' -63.2 NC_005261.1 + 15794 0.67 0.558417
Target:  5'- cGCCGcCCG-CGcGGCCagcGCCGCCaCCCa -3'
miRNA:   3'- cUGGC-GGCaGCaCUGG---UGGCGGgGGG- -5'
23803 5' -63.2 NC_005261.1 + 69622 0.67 0.558417
Target:  5'- cGCCGcCCGgcacggCGUGcgcuACCugCGCgCCCUCg -3'
miRNA:   3'- cUGGC-GGCa-----GCAC----UGGugGCG-GGGGG- -5'
23803 5' -63.2 NC_005261.1 + 119494 0.67 0.558417
Target:  5'- --aCGCCGgc---GCCGCCGCCCgCCa -3'
miRNA:   3'- cugGCGGCagcacUGGUGGCGGGgGG- -5'
23803 5' -63.2 NC_005261.1 + 129329 0.67 0.557465
Target:  5'- cGCCG-CGUCGccGACCucGCCGCgguagcgCCCCCu -3'
miRNA:   3'- cUGGCgGCAGCa-CUGG--UGGCG-------GGGGG- -5'
23803 5' -63.2 NC_005261.1 + 95730 0.67 0.548921
Target:  5'- -cCCGCCGcgcucagCGgcGCCGCCGCCgCCgCCg -3'
miRNA:   3'- cuGGCGGCa------GCacUGGUGGCGG-GG-GG- -5'
23803 5' -63.2 NC_005261.1 + 20632 0.67 0.548921
Target:  5'- gGACUGCCGgccCGgu-UCGCCGCCCgCaCCg -3'
miRNA:   3'- -CUGGCGGCa--GCacuGGUGGCGGG-G-GG- -5'
23803 5' -63.2 NC_005261.1 + 120256 0.67 0.548921
Target:  5'- cGGCUGCCa-CGccGGCCgucuACCGCCCgCCCg -3'
miRNA:   3'- -CUGGCGGcaGCa-CUGG----UGGCGGG-GGG- -5'
23803 5' -63.2 NC_005261.1 + 67365 0.67 0.548921
Target:  5'- aGGCCGCCGgcagcGCCACCGCCgCg- -3'
miRNA:   3'- -CUGGCGGCagcacUGGUGGCGGgGgg -5'
23803 5' -63.2 NC_005261.1 + 45561 0.67 0.548921
Target:  5'- cGGCUGCUG-C-UGGCgGCCGgcaaCCCCCCg -3'
miRNA:   3'- -CUGGCGGCaGcACUGgUGGC----GGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 77950 0.67 0.548921
Target:  5'- -cCCGCCuUCGcGGCCGCgcagcaccaccUGCCCCCa -3'
miRNA:   3'- cuGGCGGcAGCaCUGGUG-----------GCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 36701 0.67 0.548921
Target:  5'- cGGCCccCCG-CGcUGACCGCCGgCCCuaCCCg -3'
miRNA:   3'- -CUGGc-GGCaGC-ACUGGUGGC-GGG--GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.