miRNA display CGI


Results 41 - 60 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23803 5' -63.2 NC_005261.1 + 19982 0.74 0.210725
Target:  5'- cGACCGCCcuaUCGUccccGGCCGCgGCCCCUg -3'
miRNA:   3'- -CUGGCGGc--AGCA----CUGGUGgCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 20038 0.67 0.547974
Target:  5'- gGGCCGguuCCGUCcggcgguGUGACCuCCaGCCCCUUg -3'
miRNA:   3'- -CUGGC---GGCAG-------CACUGGuGG-CGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 20225 0.67 0.539476
Target:  5'- -cCCGCUGcC-UGGCCAgCCGCUCCgCCg -3'
miRNA:   3'- cuGGCGGCaGcACUGGU-GGCGGGG-GG- -5'
23803 5' -63.2 NC_005261.1 + 20632 0.67 0.548921
Target:  5'- gGACUGCCGgccCGgu-UCGCCGCCCgCaCCg -3'
miRNA:   3'- -CUGGCGGCa--GCacuGGUGGCGGG-G-GG- -5'
23803 5' -63.2 NC_005261.1 + 21779 0.72 0.271151
Target:  5'- aGCCGCCG-CGgcgcgGGCCGCCGCagCCgCCg -3'
miRNA:   3'- cUGGCGGCaGCa----CUGGUGGCGg-GG-GG- -5'
23803 5' -63.2 NC_005261.1 + 21881 0.67 0.539476
Target:  5'- cGCgCGcCCG-CGgGGCCcCCGCCCCCa -3'
miRNA:   3'- cUG-GC-GGCaGCaCUGGuGGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 22806 0.67 0.548921
Target:  5'- cGGCCGgCGgcggCGcuGCCGCCGCCgCCg -3'
miRNA:   3'- -CUGGCgGCa---GCacUGGUGGCGGgGGg -5'
23803 5' -63.2 NC_005261.1 + 24066 0.68 0.484133
Target:  5'- -cCCGCCcgaGUGgGCC-CCGCCCaCCCa -3'
miRNA:   3'- cuGGCGGcagCAC-UGGuGGCGGG-GGG- -5'
23803 5' -63.2 NC_005261.1 + 27502 0.67 0.529151
Target:  5'- gGACCGCCagGUCuGggcgGGCCAgcugggcCCGCCCUCg -3'
miRNA:   3'- -CUGGCGG--CAG-Ca---CUGGU-------GGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 27647 0.68 0.493178
Target:  5'- cGCCGCCGUCGgGACgAgggGCCCCUUu -3'
miRNA:   3'- cUGGCGGCAGCaCUGgUgg-CGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 27880 0.7 0.359587
Target:  5'- cGGCCGCCGUaaccCGgcgcgcaucGGCCGCCGCUgCCg -3'
miRNA:   3'- -CUGGCGGCA----GCa--------CUGGUGGCGGgGGg -5'
23803 5' -63.2 NC_005261.1 + 28212 0.69 0.440175
Target:  5'- cGCCGCUGcCGcGGCCccaGCUaCCCCCCg -3'
miRNA:   3'- cUGGCGGCaGCaCUGG---UGGcGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 28280 0.68 0.457492
Target:  5'- uGCCGCCGcCGcGGCCGCgguCGUCUCCUu -3'
miRNA:   3'- cUGGCGGCaGCaCUGGUG---GCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 28848 0.9 0.01769
Target:  5'- aGGCgGCCGUCGUGGCCGCCGCCCUUg -3'
miRNA:   3'- -CUGgCGGCAGCACUGGUGGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 28875 0.66 0.57754
Target:  5'- aGGCUGCgGcgCGgacGCCGCCGCCUgcgCCCa -3'
miRNA:   3'- -CUGGCGgCa-GCac-UGGUGGCGGG---GGG- -5'
23803 5' -63.2 NC_005261.1 + 29260 0.69 0.440175
Target:  5'- gGGCCGCCGcCGcuggagGGCCcgcugcugaCGCCCUCCg -3'
miRNA:   3'- -CUGGCGGCaGCa-----CUGGug-------GCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 30890 0.69 0.414915
Target:  5'- uGCCGCCcgagcUCGggcuggGGCCGCCcgGCCCCUCc -3'
miRNA:   3'- cUGGCGGc----AGCa-----CUGGUGG--CGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 31042 0.71 0.347685
Target:  5'- cGCCGCCGgguccccagcgcggCGggaGCCGCCGCUgCCCg -3'
miRNA:   3'- cUGGCGGCa-------------GCac-UGGUGGCGGgGGG- -5'
23803 5' -63.2 NC_005261.1 + 31134 0.68 0.465403
Target:  5'- -uCCGCCG-CGUGccgcccggggaguACCACaCGCCCgcgCCCa -3'
miRNA:   3'- cuGGCGGCaGCAC-------------UGGUG-GCGGG---GGG- -5'
23803 5' -63.2 NC_005261.1 + 31694 0.67 0.511495
Target:  5'- cGGCgGCUGaUCGUGAUCgacGCCGUggaCCCCg -3'
miRNA:   3'- -CUGgCGGC-AGCACUGG---UGGCGg--GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.