miRNA display CGI


Results 41 - 60 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23803 5' -63.2 NC_005261.1 + 119494 0.67 0.558417
Target:  5'- --aCGCCGgc---GCCGCCGCCCgCCa -3'
miRNA:   3'- cugGCGGCagcacUGGUGGCGGGgGG- -5'
23803 5' -63.2 NC_005261.1 + 118618 0.67 0.546082
Target:  5'- cGGCCGuuGcCcUGGCCGCCGCggcggcgcucugggCCCCg -3'
miRNA:   3'- -CUGGCggCaGcACUGGUGGCG--------------GGGGg -5'
23803 5' -63.2 NC_005261.1 + 117734 0.74 0.20107
Target:  5'- cGGCCGCgCGcUGgcGCCGCCGCCCCCa -3'
miRNA:   3'- -CUGGCG-GCaGCacUGGUGGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 117631 0.69 0.406695
Target:  5'- cGACCG-CGcCG-GGCCcgcGCCGCgCCCCCc -3'
miRNA:   3'- -CUGGCgGCaGCaCUGG---UGGCG-GGGGG- -5'
23803 5' -63.2 NC_005261.1 + 116924 0.66 0.587157
Target:  5'- aGCCGCCG-CG-GGCUGCuggaCGCCUUCCg -3'
miRNA:   3'- cUGGCGGCaGCaCUGGUG----GCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 116513 0.68 0.475168
Target:  5'- cGCCGCCGcggCGgcgcgagGcCCGCCGCUCCgCg -3'
miRNA:   3'- cUGGCGGCa--GCa------CuGGUGGCGGGGgG- -5'
23803 5' -63.2 NC_005261.1 + 116162 0.66 0.606474
Target:  5'- aGCgCGCgGUCGcGGCCG-CGUCCCCg -3'
miRNA:   3'- cUG-GCGgCAGCaCUGGUgGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 116063 0.71 0.344754
Target:  5'- cGCC-CCG-CGUGGCgCGCCGgUCCCCg -3'
miRNA:   3'- cUGGcGGCaGCACUG-GUGGCgGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 115905 0.76 0.165817
Target:  5'- -cCCGCCGUCGUcagcgccGGCCGCCGCgUCCg -3'
miRNA:   3'- cuGGCGGCAGCA-------CUGGUGGCGgGGGg -5'
23803 5' -63.2 NC_005261.1 + 115491 0.67 0.548921
Target:  5'- cGGCCGCgG-CGgcgcGCCGCaGCCCCCg -3'
miRNA:   3'- -CUGGCGgCaGCac--UGGUGgCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 114993 0.68 0.484133
Target:  5'- gGGCCgGCCGcCGcGGCC-CCGgCCCCg -3'
miRNA:   3'- -CUGG-CGGCaGCaCUGGuGGCgGGGGg -5'
23803 5' -63.2 NC_005261.1 + 113562 0.66 0.616161
Target:  5'- gGACCGCgagcagugGUCgGUGGCCGCCGCgcugggcgaCCUCg -3'
miRNA:   3'- -CUGGCGg-------CAG-CACUGGUGGCGg--------GGGG- -5'
23803 5' -63.2 NC_005261.1 + 113039 0.69 0.423237
Target:  5'- gGGCCGCgCGcggCGUGgcgcGCCACCGCUCgCUg -3'
miRNA:   3'- -CUGGCG-GCa--GCAC----UGGUGGCGGGgGG- -5'
23803 5' -63.2 NC_005261.1 + 111634 0.81 0.069674
Target:  5'- uGCCGCCGcCGcccGCCGCCGCCUCCCa -3'
miRNA:   3'- cUGGCGGCaGCac-UGGUGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 111355 0.66 0.606474
Target:  5'- cGCCGaCCG-CGcGuCUGCUGCCCCCg -3'
miRNA:   3'- cUGGC-GGCaGCaCuGGUGGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 111299 0.68 0.484133
Target:  5'- -uCCGCCGcCGcUGccuCCGCCGCCgCCg -3'
miRNA:   3'- cuGGCGGCaGC-ACu--GGUGGCGGgGGg -5'
23803 5' -63.2 NC_005261.1 + 110829 0.68 0.493178
Target:  5'- gGGCCGCgGaCGaGuuuCCGCUGCCCgCCCu -3'
miRNA:   3'- -CUGGCGgCaGCaCu--GGUGGCGGG-GGG- -5'
23803 5' -63.2 NC_005261.1 + 110375 0.66 0.606474
Target:  5'- cGACCGCCGcauggcgcugCGgcugGACCGCuucuaCGCCUgCCu -3'
miRNA:   3'- -CUGGCGGCa---------GCa---CUGGUG-----GCGGGgGG- -5'
23803 5' -63.2 NC_005261.1 + 110142 0.73 0.242107
Target:  5'- -cCCGCCGaCGUcaucggcauGGCCGCCgccaccgcGCCCCCCg -3'
miRNA:   3'- cuGGCGGCaGCA---------CUGGUGG--------CGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 109992 0.66 0.620039
Target:  5'- cGGCagGUCGUCGUGgacacgcccgccggcGCCGCCGUCCUUUc -3'
miRNA:   3'- -CUGg-CGGCAGCAC---------------UGGUGGCGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.