miRNA display CGI


Results 61 - 80 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23803 5' -63.2 NC_005261.1 + 37271 0.67 0.530087
Target:  5'- uGGCCgaGCCGUgccgCGgcGACCuguugcucgcggAUCGCCCCCCg -3'
miRNA:   3'- -CUGG--CGGCA----GCa-CUGG------------UGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 20225 0.67 0.539476
Target:  5'- -cCCGCUGcC-UGGCCAgCCGCUCCgCCg -3'
miRNA:   3'- cuGGCGGCaGcACUGGU-GGCGGGG-GG- -5'
23803 5' -63.2 NC_005261.1 + 10511 0.67 0.547974
Target:  5'- cGGCCGCCGcugCG-GGCCccgcggcgcgcucGCUGUcgCCCCCg -3'
miRNA:   3'- -CUGGCGGCa--GCaCUGG-------------UGGCG--GGGGG- -5'
23803 5' -63.2 NC_005261.1 + 19771 0.67 0.539476
Target:  5'- gGGCC-CCGUCGccucGAacaCGCgGCCCUCCg -3'
miRNA:   3'- -CUGGcGGCAGCa---CUg--GUGgCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 9287 0.67 0.533836
Target:  5'- cAUCGCCG-CG-GACCGCaaccgaggauccgaGCCCCCa -3'
miRNA:   3'- cUGGCGGCaGCaCUGGUGg-------------CGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 12480 0.67 0.520758
Target:  5'- uGACgaCGCUGU-GUGGacucuCCAUgGCCCCCCg -3'
miRNA:   3'- -CUG--GCGGCAgCACU-----GGUGgCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 9333 0.67 0.520758
Target:  5'- cGCCGCCGaCGagcccaccggGAgCACCGCCgacgauCCCCg -3'
miRNA:   3'- cUGGCGGCaGCa---------CUgGUGGCGG------GGGG- -5'
23803 5' -63.2 NC_005261.1 + 101432 0.67 0.530087
Target:  5'- cGGCCGCCGaggCGgcgcgGuCCAgCGCUggCCCCa -3'
miRNA:   3'- -CUGGCGGCa--GCa----CuGGUgGCGG--GGGG- -5'
23803 5' -63.2 NC_005261.1 + 103081 0.67 0.539476
Target:  5'- cACCGCCGcgaaggcCGggcccagcccGGCCAgCGCCCCCg -3'
miRNA:   3'- cUGGCGGCa------GCa---------CUGGUgGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 129770 0.67 0.520758
Target:  5'- cGACCGCCGggcUCGgcccGGCCuucgccuUCGCCUCCg -3'
miRNA:   3'- -CUGGCGGC---AGCa---CUGGu------GGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 107315 0.67 0.520758
Target:  5'- cGGCCGCCG-CGUGcagcucgcccAgCACgGCCUCCg -3'
miRNA:   3'- -CUGGCGGCaGCAC----------UgGUGgCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 59722 0.67 0.520758
Target:  5'- -cCCGCCGggcggcagCGgcgGcgcGCgGCCGCCCUCCa -3'
miRNA:   3'- cuGGCGGCa-------GCa--C---UGgUGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 76999 0.67 0.530087
Target:  5'- -cUCGCCG-CGcGcGCgCGCCGCCCUCCu -3'
miRNA:   3'- cuGGCGGCaGCaC-UG-GUGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 4896 0.67 0.530087
Target:  5'- cGGCCGCC-UCGgcuucggcGGCgGCUGCCUCCg -3'
miRNA:   3'- -CUGGCGGcAGCa-------CUGgUGGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 32414 0.67 0.520758
Target:  5'- uGCCGCCGcCGgcGACgGgaGCCCCgCCg -3'
miRNA:   3'- cUGGCGGCaGCa-CUGgUggCGGGG-GG- -5'
23803 5' -63.2 NC_005261.1 + 47633 0.67 0.530087
Target:  5'- cGGCCGCCG-CGcGcACCG-CGUCCUCCu -3'
miRNA:   3'- -CUGGCGGCaGCaC-UGGUgGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 122267 0.67 0.530087
Target:  5'- cGCCGCCGUCaG-GGCCguuagcaucagcGCgGCCCCgCu -3'
miRNA:   3'- cUGGCGGCAG-CaCUGG------------UGgCGGGGgG- -5'
23803 5' -63.2 NC_005261.1 + 37728 0.67 0.537594
Target:  5'- -cCCGCCGgagccccCCGUCGCCCCCCg -3'
miRNA:   3'- cuGGCGGCagcacu-GGUGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 9570 0.67 0.539476
Target:  5'- -cCCGCCag-GUGAgCC-CCGCCCaCCCa -3'
miRNA:   3'- cuGGCGGcagCACU-GGuGGCGGG-GGG- -5'
23803 5' -63.2 NC_005261.1 + 21881 0.67 0.539476
Target:  5'- cGCgCGcCCG-CGgGGCCcCCGCCCCCa -3'
miRNA:   3'- cUG-GC-GGCaGCaCUGGuGGCGGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.