miRNA display CGI


Results 61 - 80 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23803 5' -63.2 NC_005261.1 + 55252 0.72 0.283531
Target:  5'- aGCCGCCG-CGagGAggUCugCGCCCCCUg -3'
miRNA:   3'- cUGGCGGCaGCa-CU--GGugGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 131389 0.72 0.289886
Target:  5'- uGCgUGCCGUCaccGCCACCgaGCCCCCCg -3'
miRNA:   3'- cUG-GCGGCAGcacUGGUGG--CGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 65020 0.72 0.289886
Target:  5'- aGACCGCCGugcaguccUCG-GGCaacuCACCGUUCCCCa -3'
miRNA:   3'- -CUGGCGGC--------AGCaCUG----GUGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 11017 0.71 0.302932
Target:  5'- cGACgGCC-UCGUcGCCGggcCCGUCCCCCg -3'
miRNA:   3'- -CUGgCGGcAGCAcUGGU---GGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 66248 0.71 0.302932
Target:  5'- -cCCGCCGUCGUcACCAgcaCGCCgUCCa -3'
miRNA:   3'- cuGGCGGCAGCAcUGGUg--GCGGgGGG- -5'
23803 5' -63.2 NC_005261.1 + 32677 0.71 0.302932
Target:  5'- cGCCGCCGc-----CCGCCGCCCUCCg -3'
miRNA:   3'- cUGGCGGCagcacuGGUGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 45908 0.71 0.309622
Target:  5'- cGCuCGCCGUCGUccucGCCcucGCCGUCCCCg -3'
miRNA:   3'- cUG-GCGGCAGCAc---UGG---UGGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 106374 0.71 0.309622
Target:  5'- cGCCGCCGUCGccguuGCCGCCGCUgUCg -3'
miRNA:   3'- cUGGCGGCAGCac---UGGUGGCGGgGGg -5'
23803 5' -63.2 NC_005261.1 + 131634 0.71 0.309622
Target:  5'- -cCCGCCG-CGagGACCGacggGCCCCCCg -3'
miRNA:   3'- cuGGCGGCaGCa-CUGGUgg--CGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 67392 0.71 0.316425
Target:  5'- aGACCGCCGcgcgCGccagGACCAgCGCCgCCa -3'
miRNA:   3'- -CUGGCGGCa---GCa---CUGGUgGCGGgGGg -5'
23803 5' -63.2 NC_005261.1 + 103385 0.71 0.316425
Target:  5'- cGCCGCCGcgcCGcGGCCGCCuGCgCCUCCa -3'
miRNA:   3'- cUGGCGGCa--GCaCUGGUGG-CG-GGGGG- -5'
23803 5' -63.2 NC_005261.1 + 102227 0.71 0.323339
Target:  5'- cACgGCC-UCGaUGGCCGCCGUCgCCCg -3'
miRNA:   3'- cUGgCGGcAGC-ACUGGUGGCGGgGGG- -5'
23803 5' -63.2 NC_005261.1 + 94080 0.71 0.323339
Target:  5'- cGCCGCCGcCGgGAaCGCCGCCgUCCg -3'
miRNA:   3'- cUGGCGGCaGCaCUgGUGGCGGgGGG- -5'
23803 5' -63.2 NC_005261.1 + 58126 0.71 0.330365
Target:  5'- aGCCuGCCGagCGUGGCCACCGCCa--- -3'
miRNA:   3'- cUGG-CGGCa-GCACUGGUGGCGGgggg -5'
23803 5' -63.2 NC_005261.1 + 49967 0.71 0.330365
Target:  5'- --gCGCCGUCGUcauccccggcGCCGCCGucgucCCCCCCg -3'
miRNA:   3'- cugGCGGCAGCAc---------UGGUGGC-----GGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 55769 0.71 0.330365
Target:  5'- cGCCGCCGccCG-GAUCugC-CCCCCCa -3'
miRNA:   3'- cUGGCGGCa-GCaCUGGugGcGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 80840 0.71 0.337504
Target:  5'- -cUCGuCCGUCGUGugCcaGCCGCgCaCCCCa -3'
miRNA:   3'- cuGGC-GGCAGCACugG--UGGCG-G-GGGG- -5'
23803 5' -63.2 NC_005261.1 + 124877 0.71 0.337504
Target:  5'- -uUCGUCGUC-UGGCCcggguuccugGCCGCCCCCg -3'
miRNA:   3'- cuGGCGGCAGcACUGG----------UGGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 71440 0.71 0.337504
Target:  5'- -cCCGCgGcgCGcaGCCGCCGCCUCCCg -3'
miRNA:   3'- cuGGCGgCa-GCacUGGUGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 72708 0.71 0.344754
Target:  5'- -uCCGCCagcGUCGcGcCCGCCGCCCCguCCg -3'
miRNA:   3'- cuGGCGG---CAGCaCuGGUGGCGGGG--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.