miRNA display CGI


Results 61 - 80 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23803 5' -63.2 NC_005261.1 + 32313 0.72 0.265125
Target:  5'- cGCCGCCGcCGcGGCCGCgGCgCCCg -3'
miRNA:   3'- cUGGCGGCaGCaCUGGUGgCGgGGGg -5'
23803 5' -63.2 NC_005261.1 + 32414 0.67 0.520758
Target:  5'- uGCCGCCGcCGgcGACgGgaGCCCCgCCg -3'
miRNA:   3'- cUGGCGGCaGCa-CUGgUggCGGGG-GG- -5'
23803 5' -63.2 NC_005261.1 + 32677 0.71 0.302932
Target:  5'- cGCCGCCGc-----CCGCCGCCCUCCg -3'
miRNA:   3'- cUGGCGGCagcacuGGUGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 33087 0.7 0.365643
Target:  5'- cGGCCGCCGccacauccccugCGUcGGgCACuCGCCCUCCg -3'
miRNA:   3'- -CUGGCGGCa-----------GCA-CUgGUG-GCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 33177 0.78 0.112371
Target:  5'- aGCCGCCGUCc--GCC-CUGCCCCCCg -3'
miRNA:   3'- cUGGCGGCAGcacUGGuGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 33260 0.77 0.143735
Target:  5'- cGCCgGCCGUCGcGGCCcCCGUCCCCg -3'
miRNA:   3'- cUGG-CGGCAGCaCUGGuGGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 33301 0.67 0.530087
Target:  5'- cACC-CCGUCGcgggaccagGACCGCUGCCgCCg -3'
miRNA:   3'- cUGGcGGCAGCa--------CUGGUGGCGGgGGg -5'
23803 5' -63.2 NC_005261.1 + 33335 0.76 0.147279
Target:  5'- cGCCGCCGcCGccGCCACCGCCgCCaCCg -3'
miRNA:   3'- cUGGCGGCaGCacUGGUGGCGG-GG-GG- -5'
23803 5' -63.2 NC_005261.1 + 33396 0.7 0.390565
Target:  5'- aGCCGCCGcCGcaGCCGCCGCCgcagCCgCCg -3'
miRNA:   3'- cUGGCGGCaGCacUGGUGGCGG----GG-GG- -5'
23803 5' -63.2 NC_005261.1 + 33432 0.7 0.390565
Target:  5'- aGCCGCCGcCGcaGCCGCCGCCgcagCCgCCg -3'
miRNA:   3'- cUGGCGGCaGCacUGGUGGCGG----GG-GG- -5'
23803 5' -63.2 NC_005261.1 + 33953 0.78 0.123151
Target:  5'- cGCCGCCuGUCGcUGgaccuucugccgccGCCGCCGCCgCCCCg -3'
miRNA:   3'- cUGGCGG-CAGC-AC--------------UGGUGGCGG-GGGG- -5'
23803 5' -63.2 NC_005261.1 + 35019 0.66 0.606474
Target:  5'- cGGCCGgCGUCucggucgcUGGCgCGCCGCCCUa- -3'
miRNA:   3'- -CUGGCgGCAGc-------ACUG-GUGGCGGGGgg -5'
23803 5' -63.2 NC_005261.1 + 35122 0.75 0.18291
Target:  5'- aGCCGCCGgcggCGUcGcACC-CCGCCCCCg -3'
miRNA:   3'- cUGGCGGCa---GCA-C-UGGuGGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 35570 0.66 0.587157
Target:  5'- aGCCGCCG-CGcuauccuCCAUCGCCcggaCCCCa -3'
miRNA:   3'- cUGGCGGCaGCacu----GGUGGCGG----GGGG- -5'
23803 5' -63.2 NC_005261.1 + 36701 0.67 0.548921
Target:  5'- cGGCCccCCG-CGcUGACCGCCGgCCCuaCCCg -3'
miRNA:   3'- -CUGGc-GGCaGC-ACUGGUGGC-GGG--GGG- -5'
23803 5' -63.2 NC_005261.1 + 37271 0.67 0.530087
Target:  5'- uGGCCgaGCCGUgccgCGgcGACCuguugcucgcggAUCGCCCCCCg -3'
miRNA:   3'- -CUGG--CGGCA----GCa-CUGG------------UGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 37728 0.67 0.537594
Target:  5'- -cCCGCCGgagccccCCGUCGCCCCCCg -3'
miRNA:   3'- cuGGCGGCagcacu-GGUGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 39486 0.7 0.367169
Target:  5'- -cCCGCCG-CGgacGAUgAUCGCCCCUCg -3'
miRNA:   3'- cuGGCGGCaGCa--CUGgUGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 39526 0.67 0.520758
Target:  5'- gGGCCGCgCGccucuaCGcGGCCGCCaGCCCCgCg -3'
miRNA:   3'- -CUGGCG-GCa-----GCaCUGGUGG-CGGGGgG- -5'
23803 5' -63.2 NC_005261.1 + 39599 0.73 0.259209
Target:  5'- cGAgCGCCGcgCGcccCCGCCGCCCCCg -3'
miRNA:   3'- -CUgGCGGCa-GCacuGGUGGCGGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.