miRNA display CGI


Results 81 - 100 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23803 5' -63.2 NC_005261.1 + 104144 0.71 0.344754
Target:  5'- cGGCCGCCagGUCG--GCCACCGCgCCgUCCg -3'
miRNA:   3'- -CUGGCGG--CAGCacUGGUGGCG-GG-GGG- -5'
23803 5' -63.2 NC_005261.1 + 104456 0.71 0.344754
Target:  5'- cGCCGCCGgcggCGccGuCCACCucGCCCUCCa -3'
miRNA:   3'- cUGGCGGCa---GCa-CuGGUGG--CGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 116063 0.71 0.344754
Target:  5'- cGCC-CCG-CGUGGCgCGCCGgUCCCCg -3'
miRNA:   3'- cUGGcGGCaGCACUG-GUGGCgGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 86728 0.71 0.344754
Target:  5'- cGCCGCC-UCGU--CCGCCGCgCCCUg -3'
miRNA:   3'- cUGGCGGcAGCAcuGGUGGCGgGGGG- -5'
23803 5' -63.2 NC_005261.1 + 31042 0.71 0.347685
Target:  5'- cGCCGCCGgguccccagcgcggCGggaGCCGCCGCUgCCCg -3'
miRNA:   3'- cUGGCGGCa-------------GCac-UGGUGGCGGgGGG- -5'
23803 5' -63.2 NC_005261.1 + 98633 0.7 0.359587
Target:  5'- cGCCGauuuCGUCGUccaGCCACUccucgGCCCCCCa -3'
miRNA:   3'- cUGGCg---GCAGCAc--UGGUGG-----CGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 77505 0.7 0.359587
Target:  5'- uGCCGcCCGcCaucGCCGCCGCgCCCCCg -3'
miRNA:   3'- cUGGC-GGCaGcacUGGUGGCG-GGGGG- -5'
23803 5' -63.2 NC_005261.1 + 82389 0.7 0.359587
Target:  5'- cGCCGCCcagcccgCGgGGCCGUCGUCCCCCg -3'
miRNA:   3'- cUGGCGGca-----GCaCUGGUGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 27880 0.7 0.359587
Target:  5'- cGGCCGCCGUaaccCGgcgcgcaucGGCCGCCGCUgCCg -3'
miRNA:   3'- -CUGGCGGCA----GCa--------CUGGUGGCGGgGGg -5'
23803 5' -63.2 NC_005261.1 + 74414 0.7 0.359587
Target:  5'- cGGCCGCgGgCGggagGGCCGaggagagCGCCCCCCc -3'
miRNA:   3'- -CUGGCGgCaGCa---CUGGUg------GCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 33087 0.7 0.365643
Target:  5'- cGGCCGCCGccacauccccugCGUcGGgCACuCGCCCUCCg -3'
miRNA:   3'- -CUGGCGGCa-----------GCA-CUgGUG-GCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 100853 0.7 0.366405
Target:  5'- cGACCuGCgCGUCGaaGGCCGCCagaagcgcgcgcaGCCCCUCg -3'
miRNA:   3'- -CUGG-CG-GCAGCa-CUGGUGG-------------CGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 95030 0.7 0.366405
Target:  5'- cGCCGCCGgcggcgcUCGgcGCCgcagACCGCCCUCCg -3'
miRNA:   3'- cUGGCGGC-------AGCacUGG----UGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 121542 0.7 0.367169
Target:  5'- -gUCGCUGUCGgaGCCGCCGUCCUCg -3'
miRNA:   3'- cuGGCGGCAGCacUGGUGGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 39486 0.7 0.367169
Target:  5'- -cCCGCCG-CGgacGAUgAUCGCCCCUCg -3'
miRNA:   3'- cuGGCGGCaGCa--CUGgUGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 63427 0.7 0.367169
Target:  5'- cGACuCGCCGUCGccggcguaGGCCG-CGCCCgCCg -3'
miRNA:   3'- -CUG-GCGGCAGCa-------CUGGUgGCGGGgGG- -5'
23803 5' -63.2 NC_005261.1 + 67762 0.7 0.37486
Target:  5'- -cUCGCCGUCcgaGgCGCCGCCCCCg -3'
miRNA:   3'- cuGGCGGCAGcacUgGUGGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 86867 0.7 0.37486
Target:  5'- cGCCGCCGggcgCGgcGGCCuugGCCGCgCCCUg -3'
miRNA:   3'- cUGGCGGCa---GCa-CUGG---UGGCGgGGGG- -5'
23803 5' -63.2 NC_005261.1 + 74365 0.7 0.382659
Target:  5'- gGGCgGCCG-CGUccGCCcCCGCCCCCg -3'
miRNA:   3'- -CUGgCGGCaGCAc-UGGuGGCGGGGGg -5'
23803 5' -63.2 NC_005261.1 + 33396 0.7 0.390565
Target:  5'- aGCCGCCGcCGcaGCCGCCGCCgcagCCgCCg -3'
miRNA:   3'- cUGGCGGCaGCacUGGUGGCGG----GG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.