miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23804 3' -63.8 NC_005261.1 + 109121 0.66 0.526458
Target:  5'- aGGGCGGCggugUCGUG-CGCGGccccaGGCagGCg -3'
miRNA:   3'- gCUCGCCGa---GGCGCuGCGCC-----CCGa-CG- -5'
23804 3' -63.8 NC_005261.1 + 30972 0.66 0.530203
Target:  5'- gCGA-CGGCccgCCGCGGCGCaagcgcaagucggccGGGGCcagggGCc -3'
miRNA:   3'- -GCUcGCCGa--GGCGCUGCG---------------CCCCGa----CG- -5'
23804 3' -63.8 NC_005261.1 + 125967 0.66 0.526458
Target:  5'- -cAGCacuucGCUCgGCGACG-GGGGCcGCa -3'
miRNA:   3'- gcUCGc----CGAGgCGCUGCgCCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 48359 0.66 0.526458
Target:  5'- gGAGcCGGCUCCacuucgggaGGCGCaggcuguacuuGGGGCUcGCg -3'
miRNA:   3'- gCUC-GCCGAGGcg-------CUGCG-----------CCCCGA-CG- -5'
23804 3' -63.8 NC_005261.1 + 87606 0.66 0.526458
Target:  5'- gGuGcCGGCgaccaCCGCGACGuuGGGC-GCg -3'
miRNA:   3'- gCuC-GCCGa----GGCGCUGCgcCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 134144 0.66 0.535837
Target:  5'- uGGGCuGCgCC-UGGCGCcacccGGGGCUGCu -3'
miRNA:   3'- gCUCGcCGaGGcGCUGCG-----CCCCGACG- -5'
23804 3' -63.8 NC_005261.1 + 98914 0.66 0.526458
Target:  5'- gCGGGuCGGCggggUCgGCuGCGgGGGGCaGCg -3'
miRNA:   3'- -GCUC-GCCG----AGgCGcUGCgCCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 12769 0.66 0.526458
Target:  5'- -aGGCGGCg--GUGGCGgGGGGCUcgucgGCg -3'
miRNA:   3'- gcUCGCCGaggCGCUGCgCCCCGA-----CG- -5'
23804 3' -63.8 NC_005261.1 + 23535 0.66 0.530203
Target:  5'- gCGAGCGGCagaggcggcaggagCCGuCGcAgGUGGGGCaggGCu -3'
miRNA:   3'- -GCUCGCCGa-------------GGC-GC-UgCGCCCCGa--CG- -5'
23804 3' -63.8 NC_005261.1 + 92326 0.66 0.533018
Target:  5'- cCGcGCGGCccaUCCGCGggccACcggucacggugcagGCGGGGCaGCa -3'
miRNA:   3'- -GCuCGCCG---AGGCGC----UG--------------CGCCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 23016 0.66 0.526458
Target:  5'- -aGGCGGC-CCGCGaACGCcuuugccgggaGGGGacgGCg -3'
miRNA:   3'- gcUCGCCGaGGCGC-UGCG-----------CCCCga-CG- -5'
23804 3' -63.8 NC_005261.1 + 105157 0.66 0.526458
Target:  5'- --cGCGGCUCgaggGCGGCGUccacGGGGCccGCc -3'
miRNA:   3'- gcuCGCCGAGg---CGCUGCG----CCCCGa-CG- -5'
23804 3' -63.8 NC_005261.1 + 73575 0.66 0.535837
Target:  5'- aGAGCacgGGCccccCCGCGGCggagGCGGcGGCcGCg -3'
miRNA:   3'- gCUCG---CCGa---GGCGCUG----CGCC-CCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 4573 0.66 0.526458
Target:  5'- gCGGGCGGgUCCG----GCGGGGC-GCc -3'
miRNA:   3'- -GCUCGCCgAGGCgcugCGCCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 91731 0.66 0.525524
Target:  5'- cCGcGGCgGGCUUCGCGGCGCucacgccGGcGGC-GCa -3'
miRNA:   3'- -GC-UCG-CCGAGGCGCUGCG-------CC-CCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 34589 0.66 0.535837
Target:  5'- aGuGCGGCUUCGaCGACGaCGGccuGGCcgacGCg -3'
miRNA:   3'- gCuCGCCGAGGC-GCUGC-GCC---CCGa---CG- -5'
23804 3' -63.8 NC_005261.1 + 74806 0.66 0.573881
Target:  5'- uCGA--GGC-CCGCGugGCGGaGGUgGCc -3'
miRNA:   3'- -GCUcgCCGaGGCGCugCGCC-CCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 6437 0.66 0.535837
Target:  5'- aGGGCGG-UCCGgGGgccgGCcGGGCUGCc -3'
miRNA:   3'- gCUCGCCgAGGCgCUg---CGcCCCGACG- -5'
23804 3' -63.8 NC_005261.1 + 22045 0.66 0.535837
Target:  5'- -cAGgGGCUCCgGCGGgGUucaGGGGCUccgGCg -3'
miRNA:   3'- gcUCgCCGAGG-CGCUgCG---CCCCGA---CG- -5'
23804 3' -63.8 NC_005261.1 + 29563 0.66 0.534897
Target:  5'- -cAGCuGGCgcgCCugcugcaGCGGCGCGugcaGGGCUGCc -3'
miRNA:   3'- gcUCG-CCGa--GG-------CGCUGCGC----CCCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.