miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23804 3' -63.8 NC_005261.1 + 38945 0.89 0.016535
Target:  5'- cCGGGCGGg-CCGCGGCGCGcGGGCUGCg -3'
miRNA:   3'- -GCUCGCCgaGGCGCUGCGC-CCCGACG- -5'
23804 3' -63.8 NC_005261.1 + 44441 0.81 0.06536
Target:  5'- gGAGCGGCUCuCGCGGCuGUGGGagcaggagcuGCUGCg -3'
miRNA:   3'- gCUCGCCGAG-GCGCUG-CGCCC----------CGACG- -5'
23804 3' -63.8 NC_005261.1 + 31674 0.79 0.082158
Target:  5'- --uGCGGCUggCCGCGGCGCGGcGGCgGCu -3'
miRNA:   3'- gcuCGCCGA--GGCGCUGCGCC-CCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 97666 0.78 0.093198
Target:  5'- gGGGcCGGCgUCCGCGGggcuuggGCGGGGCUGCc -3'
miRNA:   3'- gCUC-GCCG-AGGCGCUg------CGCCCCGACG- -5'
23804 3' -63.8 NC_005261.1 + 128100 0.78 0.093198
Target:  5'- aCGGGCGaGCggCGCGGCGCGGGGUcgggccgagUGCg -3'
miRNA:   3'- -GCUCGC-CGagGCGCUGCGCCCCG---------ACG- -5'
23804 3' -63.8 NC_005261.1 + 21772 0.78 0.100483
Target:  5'- cCGGGCGaGCcgCCGCGGCGCGGGccGCcGCa -3'
miRNA:   3'- -GCUCGC-CGa-GGCGCUGCGCCC--CGaCG- -5'
23804 3' -63.8 NC_005261.1 + 110242 0.78 0.108303
Target:  5'- uGGGCGGCgCgGCGccCGgGGGGCUGCg -3'
miRNA:   3'- gCUCGCCGaGgCGCu-GCgCCCCGACG- -5'
23804 3' -63.8 NC_005261.1 + 29915 0.77 0.116691
Target:  5'- gCGAGCGGCUgCGCGAgcugGCGGacGCUGCg -3'
miRNA:   3'- -GCUCGCCGAgGCGCUg---CGCCc-CGACG- -5'
23804 3' -63.8 NC_005261.1 + 86195 0.77 0.119619
Target:  5'- cCGAGCgGGCUCCGCGucgGCGCgccgaaccGGGGCaGCc -3'
miRNA:   3'- -GCUCG-CCGAGGCGC---UGCG--------CCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 127791 0.77 0.119619
Target:  5'- uCGAGCGGCgggccggcgCCGCGGCgGCGGGccGCUcGCg -3'
miRNA:   3'- -GCUCGCCGa--------GGCGCUG-CGCCC--CGA-CG- -5'
23804 3' -63.8 NC_005261.1 + 28767 0.77 0.122616
Target:  5'- cCGGG-GGCgccugggCCGCGGCGCGGGcGCUcGCg -3'
miRNA:   3'- -GCUCgCCGa------GGCGCUGCGCCC-CGA-CG- -5'
23804 3' -63.8 NC_005261.1 + 110182 0.77 0.125682
Target:  5'- cCGGGCGGCaguUCCGCGACGUugaGGaGGCcugGCg -3'
miRNA:   3'- -GCUCGCCG---AGGCGCUGCG---CC-CCGa--CG- -5'
23804 3' -63.8 NC_005261.1 + 75476 0.77 0.125682
Target:  5'- cCGGGCGGCggCGCGggccgcuacgaGCGCGGGGC-GCu -3'
miRNA:   3'- -GCUCGCCGagGCGC-----------UGCGCCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 1047 0.76 0.132028
Target:  5'- gCGGGCGGCggcguuaGCGGCGCggGGGGCUGg -3'
miRNA:   3'- -GCUCGCCGagg----CGCUGCG--CCCCGACg -5'
23804 3' -63.8 NC_005261.1 + 70865 0.76 0.135311
Target:  5'- aGGGCGGCcgCCGUGGCGUGGccGGCggUGCa -3'
miRNA:   3'- gCUCGCCGa-GGCGCUGCGCC--CCG--ACG- -5'
23804 3' -63.8 NC_005261.1 + 14350 0.76 0.135311
Target:  5'- aGcAGCGGCagcagCCGCGGC-CGGGGCgGCg -3'
miRNA:   3'- gC-UCGCCGa----GGCGCUGcGCCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 2529 0.76 0.139008
Target:  5'- gGGGCGGCaguaggccgccagcgCCGCGGCGCuGGGCgcggGCg -3'
miRNA:   3'- gCUCGCCGa--------------GGCGCUGCGcCCCGa---CG- -5'
23804 3' -63.8 NC_005261.1 + 56113 0.76 0.142102
Target:  5'- gCGAGCGGCgggagcgcgCCGCagGGCGgGGGGCgcggGCc -3'
miRNA:   3'- -GCUCGCCGa--------GGCG--CUGCgCCCCGa---CG- -5'
23804 3' -63.8 NC_005261.1 + 27453 0.76 0.145614
Target:  5'- -uGGCGGCgggCCGCccCGCGGGGCggGCa -3'
miRNA:   3'- gcUCGCCGa--GGCGcuGCGCCCCGa-CG- -5'
23804 3' -63.8 NC_005261.1 + 64519 0.76 0.149205
Target:  5'- gCGGGCGGCUCCuCGuCGgGGGGCa-- -3'
miRNA:   3'- -GCUCGCCGAGGcGCuGCgCCCCGacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.