miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23804 3' -63.8 NC_005261.1 + 105 0.66 0.539605
Target:  5'- cCGGGCcccgccgcccgcgccGGCgCCGCcccuggugcuCGCGGGGCUGg -3'
miRNA:   3'- -GCUCG---------------CCGaGGCGcu--------GCGCCCCGACg -5'
23804 3' -63.8 NC_005261.1 + 258 0.74 0.185302
Target:  5'- -cGGCGGCggCUGCGGCggcggcugcgGCGGcGGCUGCg -3'
miRNA:   3'- gcUCGCCGa-GGCGCUG----------CGCC-CCGACG- -5'
23804 3' -63.8 NC_005261.1 + 294 0.74 0.185302
Target:  5'- -cGGCGGCggCUGCGGCggcggcugcgGCGGcGGCUGCg -3'
miRNA:   3'- gcUCGCCGa-GGCGCUG----------CGCC-CCGACG- -5'
23804 3' -63.8 NC_005261.1 + 342 0.68 0.428253
Target:  5'- -cGGCGGC-CCGCagcccGGCGCGGcccGGCgGCg -3'
miRNA:   3'- gcUCGCCGaGGCG-----CUGCGCC---CCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 385 0.69 0.36402
Target:  5'- -uGGCGGCggCgGCGGCgGCGGcGGCaGCg -3'
miRNA:   3'- gcUCGCCGa-GgCGCUG-CGCC-CCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 972 0.74 0.178364
Target:  5'- aGAGCGGCgggCCGCG-CGCagagcggaggagacgGGGGCgggggGCg -3'
miRNA:   3'- gCUCGCCGa--GGCGCuGCG---------------CCCCGa----CG- -5'
23804 3' -63.8 NC_005261.1 + 1047 0.76 0.132028
Target:  5'- gCGGGCGGCggcguuaGCGGCGCggGGGGCUGg -3'
miRNA:   3'- -GCUCGCCGagg----CGCUGCG--CCCCGACg -5'
23804 3' -63.8 NC_005261.1 + 1155 0.66 0.558573
Target:  5'- aGAGCacuuccacgcgcgccGGCccgcgCCGCGGC-CGGGGCcgggGCc -3'
miRNA:   3'- gCUCG---------------CCGa----GGCGCUGcGCCCCGa---CG- -5'
23804 3' -63.8 NC_005261.1 + 1397 0.7 0.3345
Target:  5'- cCGGGCGccGCggCCGCGGCGgcggcgGGGGCgGCg -3'
miRNA:   3'- -GCUCGC--CGa-GGCGCUGCg-----CCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 1463 0.67 0.489609
Target:  5'- gCGuGCGGCUCCaGCaGCGCGGccGC-GCa -3'
miRNA:   3'- -GCuCGCCGAGG-CGcUGCGCCc-CGaCG- -5'
23804 3' -63.8 NC_005261.1 + 1589 0.71 0.300118
Target:  5'- -cAGCGG-UUgGCGGCGCGGuGGCUGg -3'
miRNA:   3'- gcUCGCCgAGgCGCUGCGCC-CCGACg -5'
23804 3' -63.8 NC_005261.1 + 1723 0.67 0.517142
Target:  5'- -cGGCGGCacgggcaCCGCGGUGCGcGGGCccagGCg -3'
miRNA:   3'- gcUCGCCGa------GGCGCUGCGC-CCCGa---CG- -5'
23804 3' -63.8 NC_005261.1 + 1940 0.67 0.517142
Target:  5'- gCGGGCaGCaCCGCGGCGCGcaGGUacacgUGCg -3'
miRNA:   3'- -GCUCGcCGaGGCGCUGCGCc-CCG-----ACG- -5'
23804 3' -63.8 NC_005261.1 + 2281 0.68 0.428253
Target:  5'- cCGGGCGGCgCCGCcaGCGCcuccccGGGCaGCg -3'
miRNA:   3'- -GCUCGCCGaGGCGc-UGCGc-----CCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 2401 0.72 0.245239
Target:  5'- gCGAGCGcGC-CCGCGggccccGCGCGGcGGCggGCc -3'
miRNA:   3'- -GCUCGC-CGaGGCGC------UGCGCC-CCGa-CG- -5'
23804 3' -63.8 NC_005261.1 + 2529 0.76 0.139008
Target:  5'- gGGGCGGCaguaggccgccagcgCCGCGGCGCuGGGCgcggGCg -3'
miRNA:   3'- gCUCGCCGa--------------GGCGCUGCGcCCCGa---CG- -5'
23804 3' -63.8 NC_005261.1 + 2584 0.73 0.204173
Target:  5'- cCGGGCGGCacgcggcggaagccgCCGuCGGCgGCGGGGCcGCc -3'
miRNA:   3'- -GCUCGCCGa--------------GGC-GCUG-CGCCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 2661 0.7 0.356473
Target:  5'- -cGGCGGCUcCCGCcGCGCuGGGGacccgGCg -3'
miRNA:   3'- gcUCGCCGA-GGCGcUGCG-CCCCga---CG- -5'
23804 3' -63.8 NC_005261.1 + 2786 0.7 0.3345
Target:  5'- cCGAGgGGCUgCCGcCGGCGgccgggaGGGGCcggGCg -3'
miRNA:   3'- -GCUCgCCGA-GGC-GCUGCg------CCCCGa--CG- -5'
23804 3' -63.8 NC_005261.1 + 3876 0.69 0.392889
Target:  5'- gCGAGCacggcgcgcagcucGGCgagCGCGGCGCGGGcGCccGCg -3'
miRNA:   3'- -GCUCG--------------CCGag-GCGCUGCGCCC-CGa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.