miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23804 3' -63.8 NC_005261.1 + 138056 0.69 0.36402
Target:  5'- -uGGCGGCggCgGCGGCgGCGGcGGCaGCg -3'
miRNA:   3'- gcUCGCCGa-GgCGCUG-CGCC-CCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 138013 0.68 0.428253
Target:  5'- -cGGCGGC-CCGCagcccGGCGCGGcccGGCgGCg -3'
miRNA:   3'- gcUCGCCGaGGCG-----CUGCGCC---CCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 137977 0.74 0.185302
Target:  5'- -cGGCGGCggCUGCGGCggcggcugcgGCGGcGGCUGCg -3'
miRNA:   3'- gcUCGCCGa-GGCGCUG----------CGCC-CCGACG- -5'
23804 3' -63.8 NC_005261.1 + 137941 0.74 0.185302
Target:  5'- -cGGCGGCggCUGCGGCggcggcugcgGCGGcGGCUGCg -3'
miRNA:   3'- gcUCGCCGa-GGCGCUG----------CGCC-CCGACG- -5'
23804 3' -63.8 NC_005261.1 + 137788 0.66 0.539605
Target:  5'- cCGGGCcccgccgcccgcgccGGCgCCGCcccuggugcuCGCGGGGCUGg -3'
miRNA:   3'- -GCUCG---------------CCGaGGCGcu--------GCGCCCCGACg -5'
23804 3' -63.8 NC_005261.1 + 137048 0.7 0.356473
Target:  5'- aGGGCGGaccgUCgGCaGGCGCGGaGGCgcggGCa -3'
miRNA:   3'- gCUCGCCg---AGgCG-CUGCGCC-CCGa---CG- -5'
23804 3' -63.8 NC_005261.1 + 136612 0.71 0.300118
Target:  5'- gGAGCGGCg-CGCG-CGCGccgaGGGCgGCg -3'
miRNA:   3'- gCUCGCCGagGCGCuGCGC----CCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 135892 0.66 0.545274
Target:  5'- --uGCGGCagCaCGACGUGcGGGCUGg -3'
miRNA:   3'- gcuCGCCGagGcGCUGCGC-CCCGACg -5'
23804 3' -63.8 NC_005261.1 + 135663 0.72 0.270958
Target:  5'- gCGGGCGGCccucgcucgaggagcUCUGCGccGCGCGGcGGCUaaGCc -3'
miRNA:   3'- -GCUCGCCG---------------AGGCGC--UGCGCC-CCGA--CG- -5'
23804 3' -63.8 NC_005261.1 + 135426 0.71 0.280834
Target:  5'- uCGAgGUGcGCUCgCacgccgcccagGCGGCGCGGGcGCUGCg -3'
miRNA:   3'- -GCU-CGC-CGAG-G-----------CGCUGCGCCC-CGACG- -5'
23804 3' -63.8 NC_005261.1 + 134958 0.67 0.497799
Target:  5'- gCGAG-GGCgCCgGCGACGCagacggcgaggacGGGGCcGCc -3'
miRNA:   3'- -GCUCgCCGaGG-CGCUGCG-------------CCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 134747 0.67 0.489609
Target:  5'- gCGA-CGGCacCCGCGAccCGCGGcGGCaugGCg -3'
miRNA:   3'- -GCUcGCCGa-GGCGCU--GCGCC-CCGa--CG- -5'
23804 3' -63.8 NC_005261.1 + 134565 0.75 0.156628
Target:  5'- uGGGCGGCgCCGCGGCuGCGcaGGGCggGCc -3'
miRNA:   3'- gCUCGCCGaGGCGCUG-CGC--CCCGa-CG- -5'
23804 3' -63.8 NC_005261.1 + 134425 0.71 0.293578
Target:  5'- --uGCuGCUCCaCGcugcuCGCGGGGCUGCu -3'
miRNA:   3'- gcuCGcCGAGGcGCu----GCGCCCCGACG- -5'
23804 3' -63.8 NC_005261.1 + 134198 0.72 0.25667
Target:  5'- uGGcGCGGCUCgGCG-CGCGGGucGCgGCg -3'
miRNA:   3'- gCU-CGCCGAGgCGCuGCGCCC--CGaCG- -5'
23804 3' -63.8 NC_005261.1 + 134144 0.66 0.535837
Target:  5'- uGGGCuGCgCC-UGGCGCcacccGGGGCUGCu -3'
miRNA:   3'- gCUCGcCGaGGcGCUGCG-----CCCCGACG- -5'
23804 3' -63.8 NC_005261.1 + 133805 0.67 0.507892
Target:  5'- cCGGGCuGCUCgacgGCGACGaGGcGCUGCg -3'
miRNA:   3'- -GCUCGcCGAGg---CGCUGCgCCcCGACG- -5'
23804 3' -63.8 NC_005261.1 + 133348 0.66 0.564301
Target:  5'- gCGcGCGGCgCUGCcGCGCaGGGCUucgGCu -3'
miRNA:   3'- -GCuCGCCGaGGCGcUGCGcCCCGA---CG- -5'
23804 3' -63.8 NC_005261.1 + 132624 0.69 0.395295
Target:  5'- gGGGCgcuGGCgCCGagGACGCGGGcGCgGCg -3'
miRNA:   3'- gCUCG---CCGaGGCg-CUGCGCCC-CGaCG- -5'
23804 3' -63.8 NC_005261.1 + 132534 0.71 0.287151
Target:  5'- aCGAGCGcGCcCuCGCG-CGCGaGGGCgagGCg -3'
miRNA:   3'- -GCUCGC-CGaG-GCGCuGCGC-CCCGa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.