miRNA display CGI


Results 21 - 40 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23804 3' -63.8 NC_005261.1 + 20538 0.66 0.545274
Target:  5'- cCGAcCGcGCUCUGCugGACGUGGcGGCggGCu -3'
miRNA:   3'- -GCUcGC-CGAGGCG--CUGCGCC-CCGa-CG- -5'
23804 3' -63.8 NC_005261.1 + 105157 0.66 0.526458
Target:  5'- --cGCGGCUCgaggGCGGCGUccacGGGGCccGCc -3'
miRNA:   3'- gcuCGCCGAGg---CGCUGCG----CCCCGa-CG- -5'
23804 3' -63.8 NC_005261.1 + 37144 0.66 0.544328
Target:  5'- cCGAGUGGCauggcaccagcgcUCgCGCGcgcuuGCGCcuGGGcGCUGCu -3'
miRNA:   3'- -GCUCGCCG-------------AG-GCGC-----UGCG--CCC-CGACG- -5'
23804 3' -63.8 NC_005261.1 + 73575 0.66 0.535837
Target:  5'- aGAGCacgGGCccccCCGCGGCggagGCGGcGGCcGCg -3'
miRNA:   3'- gCUCG---CCGa---GGCGCUG----CGCC-CCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 63114 0.66 0.553812
Target:  5'- aCGGGUccuccacGaGCUCCccgGUGcCGgGGGGCUGCu -3'
miRNA:   3'- -GCUCG-------C-CGAGG---CGCuGCgCCCCGACG- -5'
23804 3' -63.8 NC_005261.1 + 53077 0.66 0.542437
Target:  5'- gGGGCGGCgcacggaCCGCaGGaaggcacgcagcgcCGCGGcGCUGCg -3'
miRNA:   3'- gCUCGCCGa------GGCG-CU--------------GCGCCcCGACG- -5'
23804 3' -63.8 NC_005261.1 + 88290 0.66 0.549063
Target:  5'- aCGAcgGCGGCgCCaGCGACgacgaagagggggagGgGGaGGCUGCa -3'
miRNA:   3'- -GCU--CGCCGaGG-CGCUG---------------CgCC-CCGACG- -5'
23804 3' -63.8 NC_005261.1 + 31322 0.66 0.545274
Target:  5'- nCGGGCGcGCUcgCCGCcaGCGCGccGCUGCg -3'
miRNA:   3'- -GCUCGC-CGA--GGCGc-UGCGCccCGACG- -5'
23804 3' -63.8 NC_005261.1 + 28239 0.66 0.535837
Target:  5'- ---cCGGCgCgCGCGAUaGCgGGGGCUGCu -3'
miRNA:   3'- gcucGCCGaG-GCGCUG-CG-CCCCGACG- -5'
23804 3' -63.8 NC_005261.1 + 137788 0.66 0.539605
Target:  5'- cCGGGCcccgccgcccgcgccGGCgCCGCcccuggugcuCGCGGGGCUGg -3'
miRNA:   3'- -GCUCG---------------CCGaGGCGcu--------GCGCCCCGACg -5'
23804 3' -63.8 NC_005261.1 + 109121 0.66 0.526458
Target:  5'- aGGGCGGCggugUCGUG-CGCGGccccaGGCagGCg -3'
miRNA:   3'- gCUCGCCGa---GGCGCuGCGCC-----CCGa-CG- -5'
23804 3' -63.8 NC_005261.1 + 62409 0.66 0.544328
Target:  5'- aGAGCaGCUCCGCGcccgccgaggccaGCGCGagccggucgccGGGCcccaGCa -3'
miRNA:   3'- gCUCGcCGAGGCGC-------------UGCGC-----------CCCGa---CG- -5'
23804 3' -63.8 NC_005261.1 + 23016 0.66 0.526458
Target:  5'- -aGGCGGC-CCGCGaACGCcuuugccgggaGGGGacgGCg -3'
miRNA:   3'- gcUCGCCGaGGCGC-UGCG-----------CCCCga-CG- -5'
23804 3' -63.8 NC_005261.1 + 23535 0.66 0.530203
Target:  5'- gCGAGCGGCagaggcggcaggagCCGuCGcAgGUGGGGCaggGCu -3'
miRNA:   3'- -GCUCGCCGa-------------GGC-GC-UgCGCCCCGa--CG- -5'
23804 3' -63.8 NC_005261.1 + 91731 0.66 0.525524
Target:  5'- cCGcGGCgGGCUUCGCGGCGCucacgccGGcGGC-GCa -3'
miRNA:   3'- -GC-UCG-CCGAGGCGCUGCG-------CC-CCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 106814 0.66 0.535837
Target:  5'- cCGAGUGGC-CCGCcagcaGCGCGuGGuGC-GCg -3'
miRNA:   3'- -GCUCGCCGaGGCGc----UGCGC-CC-CGaCG- -5'
23804 3' -63.8 NC_005261.1 + 105 0.66 0.539605
Target:  5'- cCGGGCcccgccgcccgcgccGGCgCCGCcccuggugcuCGCGGGGCUGg -3'
miRNA:   3'- -GCUCG---------------CCGaGGCGcu--------GCGCCCCGACg -5'
23804 3' -63.8 NC_005261.1 + 4573 0.66 0.526458
Target:  5'- gCGGGCGGgUCCG----GCGGGGC-GCc -3'
miRNA:   3'- -GCUCGCCgAGGCgcugCGCCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 43779 0.66 0.552861
Target:  5'- gGGGCGGCgcgcggagggcgCCGCGggugaggggGCGCcGGGC-GCg -3'
miRNA:   3'- gCUCGCCGa-----------GGCGC---------UGCGcCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 37408 0.66 0.545274
Target:  5'- aGGGCguacugGGCcaaccccuacgCCGUGGCGCGcGGGCUcGCc -3'
miRNA:   3'- gCUCG------CCGa----------GGCGCUGCGC-CCCGA-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.