miRNA display CGI


Results 21 - 40 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23804 3' -63.8 NC_005261.1 + 60065 0.76 0.149205
Target:  5'- aGAGCGGCggccggUCCGCGGgcUGCGuGGGCaGCa -3'
miRNA:   3'- gCUCGCCG------AGGCGCU--GCGC-CCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 64519 0.76 0.149205
Target:  5'- gCGGGCGGCUCCuCGuCGgGGGGCa-- -3'
miRNA:   3'- -GCUCGCCGAGGcGCuGCgCCCCGacg -5'
23804 3' -63.8 NC_005261.1 + 30125 0.75 0.152876
Target:  5'- uGGcGCGGC-CCGCGACGCGGuGgaGCg -3'
miRNA:   3'- gCU-CGCCGaGGCGCUGCGCCcCgaCG- -5'
23804 3' -63.8 NC_005261.1 + 69785 0.75 0.152876
Target:  5'- uGAGCcGCUcCCGCGGCGCGcGGCgGCg -3'
miRNA:   3'- gCUCGcCGA-GGCGCUGCGCcCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 134565 0.75 0.156628
Target:  5'- uGGGCGGCgCCGCGGCuGCGcaGGGCggGCc -3'
miRNA:   3'- gCUCGCCGaGGCGCUG-CGC--CCCGa-CG- -5'
23804 3' -63.8 NC_005261.1 + 11936 0.75 0.156628
Target:  5'- -cGGCGGC-CCGCGcCGCGGcGGCUcGCc -3'
miRNA:   3'- gcUCGCCGaGGCGCuGCGCC-CCGA-CG- -5'
23804 3' -63.8 NC_005261.1 + 97572 0.75 0.160464
Target:  5'- gGGGuUGGCUCgGUGGCGCGGGcGgaGCg -3'
miRNA:   3'- gCUC-GCCGAGgCGCUGCGCCC-CgaCG- -5'
23804 3' -63.8 NC_005261.1 + 31293 0.75 0.160464
Target:  5'- aGAucGCGGCccgCCGCcGCGCGGGGCccGCg -3'
miRNA:   3'- gCU--CGCCGa--GGCGcUGCGCCCCGa-CG- -5'
23804 3' -63.8 NC_005261.1 + 64039 0.75 0.160464
Target:  5'- uCGGcGCGGCUCUGCGccGCGUGGugcgccaccGGCUGCc -3'
miRNA:   3'- -GCU-CGCCGAGGCGC--UGCGCC---------CCGACG- -5'
23804 3' -63.8 NC_005261.1 + 130469 0.75 0.164385
Target:  5'- cCGAGCGGCU-CGCGGCGUGccucGGCgGCg -3'
miRNA:   3'- -GCUCGCCGAgGCGCUGCGCc---CCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 118827 0.75 0.168391
Target:  5'- uGGGCGcggcacugccGCUCUGCGGCGCGgaGGGCgGCg -3'
miRNA:   3'- gCUCGC----------CGAGGCGCUGCGC--CCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 92476 0.75 0.168391
Target:  5'- uGAGCGGCaCCGCGAgcuCGCGGacGGCgGCc -3'
miRNA:   3'- gCUCGCCGaGGCGCU---GCGCC--CCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 20131 0.75 0.172484
Target:  5'- cCGcAGCGGCUCCGCGAgCGCucaGGCcGCg -3'
miRNA:   3'- -GC-UCGCCGAGGCGCU-GCGcc-CCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 44249 0.75 0.172484
Target:  5'- gCGcGCGGCcgacgCCGCGgcGCGCGGGGggGCg -3'
miRNA:   3'- -GCuCGCCGa----GGCGC--UGCGCCCCgaCG- -5'
23804 3' -63.8 NC_005261.1 + 972 0.74 0.178364
Target:  5'- aGAGCGGCgggCCGCG-CGCagagcggaggagacgGGGGCgggggGCg -3'
miRNA:   3'- gCUCGCCGa--GGCGCuGCG---------------CCCCGa----CG- -5'
23804 3' -63.8 NC_005261.1 + 31593 0.74 0.180938
Target:  5'- uGAGCGcGCUCgGCG-CGCaGGGCgUGCu -3'
miRNA:   3'- gCUCGC-CGAGgCGCuGCGcCCCG-ACG- -5'
23804 3' -63.8 NC_005261.1 + 59726 0.74 0.180938
Target:  5'- cCGGGCGGCagCgGCGGCGCGcGGCcGCc -3'
miRNA:   3'- -GCUCGCCGa-GgCGCUGCGCcCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 108189 0.74 0.180938
Target:  5'- --cGCGGCUCCG-GGCGCGaGaGCUGCg -3'
miRNA:   3'- gcuCGCCGAGGCgCUGCGCcC-CGACG- -5'
23804 3' -63.8 NC_005261.1 + 258 0.74 0.185302
Target:  5'- -cGGCGGCggCUGCGGCggcggcugcgGCGGcGGCUGCg -3'
miRNA:   3'- gcUCGCCGa-GGCGCUG----------CGCC-CCGACG- -5'
23804 3' -63.8 NC_005261.1 + 294 0.74 0.185302
Target:  5'- -cGGCGGCggCUGCGGCggcggcugcgGCGGcGGCUGCg -3'
miRNA:   3'- gcUCGCCGa-GGCGCUG----------CGCC-CCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.