miRNA display CGI


Results 21 - 40 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23804 3' -63.8 NC_005261.1 + 133348 0.66 0.564301
Target:  5'- gCGcGCGGCgCUGCcGCGCaGGGCUucgGCu -3'
miRNA:   3'- -GCuCGCCGaGGCGcUGCGcCCCGA---CG- -5'
23804 3' -63.8 NC_005261.1 + 127853 0.66 0.564301
Target:  5'- gGGGCGGU--CGCGGCGCcaGGGCacgaGCg -3'
miRNA:   3'- gCUCGCCGagGCGCUGCGc-CCCGa---CG- -5'
23804 3' -63.8 NC_005261.1 + 74338 0.66 0.564301
Target:  5'- cCGAGaccgcaGGCgCgGCGGCGgaaGGGGCgGCc -3'
miRNA:   3'- -GCUCg-----CCGaGgCGCUGCg--CCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 1155 0.66 0.558573
Target:  5'- aGAGCacuuccacgcgcgccGGCccgcgCCGCGGC-CGGGGCcgggGCc -3'
miRNA:   3'- gCUCG---------------CCGa----GGCGCUGcGCCCCGa---CG- -5'
23804 3' -63.8 NC_005261.1 + 100165 0.66 0.558573
Target:  5'- -cAGCGcGCccagggacgcaacgCCGUGGCgGCGGGGCaGCg -3'
miRNA:   3'- gcUCGC-CGa-------------GGCGCUG-CGCCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 113897 0.66 0.554763
Target:  5'- gCGAcGCGGCgggCGCGAUggccgaggcaGCGGGcGCgGCg -3'
miRNA:   3'- -GCU-CGCCGag-GCGCUG----------CGCCC-CGaCG- -5'
23804 3' -63.8 NC_005261.1 + 121108 0.66 0.554763
Target:  5'- cCGuGCGGgUCCucuagGGCGCGGaGGCgcggGCg -3'
miRNA:   3'- -GCuCGCCgAGGcg---CUGCGCC-CCGa---CG- -5'
23804 3' -63.8 NC_005261.1 + 105894 0.66 0.554763
Target:  5'- uCGAGCacauCUCCG-GGCGCGGGccGCUcGCg -3'
miRNA:   3'- -GCUCGcc--GAGGCgCUGCGCCC--CGA-CG- -5'
23804 3' -63.8 NC_005261.1 + 30247 0.66 0.554763
Target:  5'- uGGcGCGGUacUCgacgCGCGGCGCGGcGGCccGCg -3'
miRNA:   3'- gCU-CGCCG--AG----GCGCUGCGCC-CCGa-CG- -5'
23804 3' -63.8 NC_005261.1 + 63114 0.66 0.553812
Target:  5'- aCGGGUccuccacGaGCUCCccgGUGcCGgGGGGCUGCu -3'
miRNA:   3'- -GCUCG-------C-CGAGG---CGCuGCgCCCCGACG- -5'
23804 3' -63.8 NC_005261.1 + 43779 0.66 0.552861
Target:  5'- gGGGCGGCgcgcggagggcgCCGCGggugaggggGCGCcGGGC-GCg -3'
miRNA:   3'- gCUCGCCGa-----------GGCGC---------UGCGcCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 88290 0.66 0.549063
Target:  5'- aCGAcgGCGGCgCCaGCGACgacgaagagggggagGgGGaGGCUGCa -3'
miRNA:   3'- -GCU--CGCCGaGG-CGCUG---------------CgCC-CCGACG- -5'
23804 3' -63.8 NC_005261.1 + 37408 0.66 0.545274
Target:  5'- aGGGCguacugGGCcaaccccuacgCCGUGGCGCGcGGGCUcGCc -3'
miRNA:   3'- gCUCG------CCGa----------GGCGCUGCGC-CCCGA-CG- -5'
23804 3' -63.8 NC_005261.1 + 20538 0.66 0.545274
Target:  5'- cCGAcCGcGCUCUGCugGACGUGGcGGCggGCu -3'
miRNA:   3'- -GCUcGC-CGAGGCG--CUGCGCC-CCGa-CG- -5'
23804 3' -63.8 NC_005261.1 + 5127 0.66 0.545274
Target:  5'- gCGGGCGGC-CCGCcggcgcucGCGCGccucggcccggcGGGCcGCg -3'
miRNA:   3'- -GCUCGCCGaGGCGc-------UGCGC------------CCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 94398 0.66 0.545274
Target:  5'- -cGGCGGcCUCCuCGACGaaGGGC-GCg -3'
miRNA:   3'- gcUCGCC-GAGGcGCUGCgcCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 79713 0.66 0.545274
Target:  5'- gCGGGCGGCUguaGCaGACGCcgccGGGC-GCg -3'
miRNA:   3'- -GCUCGCCGAgg-CG-CUGCGc---CCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 135892 0.66 0.545274
Target:  5'- --uGCGGCagCaCGACGUGcGGGCUGg -3'
miRNA:   3'- gcuCGCCGagGcGCUGCGC-CCCGACg -5'
23804 3' -63.8 NC_005261.1 + 31322 0.66 0.545274
Target:  5'- nCGGGCGcGCUcgCCGCcaGCGCGccGCUGCg -3'
miRNA:   3'- -GCUCGC-CGA--GGCGc-UGCGCccCGACG- -5'
23804 3' -63.8 NC_005261.1 + 63001 0.66 0.545274
Target:  5'- cCGGcccuCGGCggCCGCGcccGCGCGGGcGCcgGCg -3'
miRNA:   3'- -GCUc---GCCGa-GGCGC---UGCGCCC-CGa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.