miRNA display CGI


Results 21 - 40 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23804 3' -63.8 NC_005261.1 + 4306 0.67 0.498713
Target:  5'- --cGCGGCcgCCGCGuaGCGCGcGGCcGCc -3'
miRNA:   3'- gcuCGCCGa-GGCGC--UGCGCcCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 4400 0.69 0.36402
Target:  5'- cCGGGCGGCg--GCGGCGCGcugccGGGCcagGCc -3'
miRNA:   3'- -GCUCGCCGaggCGCUGCGC-----CCCGa--CG- -5'
23804 3' -63.8 NC_005261.1 + 4468 0.67 0.517142
Target:  5'- -cGGCGGC-CCGUcGCGCGGcGCcGCg -3'
miRNA:   3'- gcUCGCCGaGGCGcUGCGCCcCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 4573 0.66 0.526458
Target:  5'- gCGGGCGGgUCCG----GCGGGGC-GCc -3'
miRNA:   3'- -GCUCGCCgAGGCgcugCGCCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 4840 0.68 0.436743
Target:  5'- -cGGCGGCgUCCGCGcCGCagccucaaGGGCgGCg -3'
miRNA:   3'- gcUCGCCG-AGGCGCuGCGc-------CCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 4877 0.68 0.461899
Target:  5'- aCGA-CGGCcgccucagCCGCGGCcgccucggcuucgGCGGcGGCUGCc -3'
miRNA:   3'- -GCUcGCCGa-------GGCGCUG-------------CGCC-CCGACG- -5'
23804 3' -63.8 NC_005261.1 + 5127 0.66 0.545274
Target:  5'- gCGGGCGGC-CCGCcggcgcucGCGCGccucggcccggcGGGCcGCg -3'
miRNA:   3'- -GCUCGCCGaGGCGc-------UGCGC------------CCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 5411 0.66 0.565257
Target:  5'- gCGGGCGccGCgaacgaaggagacgaCCGCGGcCGCGGcGGCgGCa -3'
miRNA:   3'- -GCUCGC--CGa--------------GGCGCU-GCGCC-CCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 5494 0.68 0.44533
Target:  5'- cCGGGgGGUagcuggggCCGCGGCaGCGGcGGCgagGCc -3'
miRNA:   3'- -GCUCgCCGa-------GGCGCUG-CGCC-CCGa--CG- -5'
23804 3' -63.8 NC_005261.1 + 6249 0.67 0.471639
Target:  5'- aGGGCcuGC-CCGCccCGCGGGGCgGCc -3'
miRNA:   3'- gCUCGc-CGaGGCGcuGCGCCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 6437 0.66 0.535837
Target:  5'- aGGGCGG-UCCGgGGgccgGCcGGGCUGCc -3'
miRNA:   3'- gCUCGCCgAGGCgCUg---CGcCCCGACG- -5'
23804 3' -63.8 NC_005261.1 + 7886 0.73 0.218509
Target:  5'- gCGAGCGGCUCUGUuccGGCGCGGcgccaccagauGGC-GCc -3'
miRNA:   3'- -GCUCGCCGAGGCG---CUGCGCC-----------CCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 10021 0.67 0.507892
Target:  5'- cCGGGCgGGCcUCGCGuCGgGGGcGCUcGCu -3'
miRNA:   3'- -GCUCG-CCGaGGCGCuGCgCCC-CGA-CG- -5'
23804 3' -63.8 NC_005261.1 + 10908 0.67 0.502376
Target:  5'- -cGGCGGCagcgccgccgccggCCGCGAcaacccccuucuCGCGGGGCccGCc -3'
miRNA:   3'- gcUCGCCGa-------------GGCGCU------------GCGCCCCGa-CG- -5'
23804 3' -63.8 NC_005261.1 + 11468 0.67 0.480583
Target:  5'- gGAGCgGGCgcggagggGCGGgGCGGGGgUGCc -3'
miRNA:   3'- gCUCG-CCGagg-----CGCUgCGCCCCgACG- -5'
23804 3' -63.8 NC_005261.1 + 11846 0.7 0.339537
Target:  5'- gCGGGCGcGCgUUCGCGAgcgcgagcgucagcUGCGGGGCgaGCc -3'
miRNA:   3'- -GCUCGC-CG-AGGCGCU--------------GCGCCCCGa-CG- -5'
23804 3' -63.8 NC_005261.1 + 11936 0.75 0.156628
Target:  5'- -cGGCGGC-CCGCGcCGCGGcGGCUcGCc -3'
miRNA:   3'- gcUCGCCGaGGCGCuGCGCC-CCGA-CG- -5'
23804 3' -63.8 NC_005261.1 + 12076 0.73 0.228889
Target:  5'- -cAGCGGCgUCCGCG-C-CGGGGCgGCu -3'
miRNA:   3'- gcUCGCCG-AGGCGCuGcGCCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 12554 0.69 0.386522
Target:  5'- gCGGG-GGCcCCGCGccgggcaACGCGGGGCcgagagggGCg -3'
miRNA:   3'- -GCUCgCCGaGGCGC-------UGCGCCCCGa-------CG- -5'
23804 3' -63.8 NC_005261.1 + 12712 0.72 0.239684
Target:  5'- cCGAGCGGCU-CG-GGCGCGcGGGCccGCc -3'
miRNA:   3'- -GCUCGCCGAgGCgCUGCGC-CCCGa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.