miRNA display CGI


Results 21 - 40 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23804 3' -63.8 NC_005261.1 + 132497 0.68 0.436743
Target:  5'- uGGGaCGcGCccgaCCGCGACGCG-GGCUGg -3'
miRNA:   3'- gCUC-GC-CGa---GGCGCUGCGCcCCGACg -5'
23804 3' -63.8 NC_005261.1 + 132365 0.67 0.480583
Target:  5'- --cGCGGCgcgcucgCCGCGcuCGCGGcGCUGUu -3'
miRNA:   3'- gcuCGCCGa------GGCGCu-GCGCCcCGACG- -5'
23804 3' -63.8 NC_005261.1 + 132156 0.66 0.573881
Target:  5'- uCGAGCGcGCcgCCGCugcaGGCaGCGcGGGCggggGCc -3'
miRNA:   3'- -GCUCGC-CGa-GGCG----CUG-CGC-CCCGa---CG- -5'
23804 3' -63.8 NC_005261.1 + 131180 0.73 0.208533
Target:  5'- cCGcAGCGGCUacgcCCGCGGCGCGGucgccgccGGC-GCg -3'
miRNA:   3'- -GC-UCGCCGA----GGCGCUGCGCC--------CCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 130469 0.75 0.164385
Target:  5'- cCGAGCGGCU-CGCGGCGUGccucGGCgGCg -3'
miRNA:   3'- -GCUCGCCGAgGCGCUGCGCc---CCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 128795 0.69 0.395295
Target:  5'- uGGGCgcccgGGC-CCGCG--GCGGGGCUcGCg -3'
miRNA:   3'- gCUCG-----CCGaGGCGCugCGCCCCGA-CG- -5'
23804 3' -63.8 NC_005261.1 + 128100 0.78 0.093198
Target:  5'- aCGGGCGaGCggCGCGGCGCGGGGUcgggccgagUGCg -3'
miRNA:   3'- -GCUCGC-CGagGCGCUGCGCCCCG---------ACG- -5'
23804 3' -63.8 NC_005261.1 + 127853 0.66 0.564301
Target:  5'- gGGGCGGU--CGCGGCGCcaGGGCacgaGCg -3'
miRNA:   3'- gCUCGCCGagGCGCUGCGc-CCCGa---CG- -5'
23804 3' -63.8 NC_005261.1 + 127791 0.77 0.119619
Target:  5'- uCGAGCGGCgggccggcgCCGCGGCgGCGGGccGCUcGCg -3'
miRNA:   3'- -GCUCGCCGa--------GGCGCUG-CGCCC--CGA-CG- -5'
23804 3' -63.8 NC_005261.1 + 127754 0.69 0.386522
Target:  5'- gGAGCGGg-CCGCGGCG-GGcgcgaagacgcccGGCUGCn -3'
miRNA:   3'- gCUCGCCgaGGCGCUGCgCC-------------CCGACG- -5'
23804 3' -63.8 NC_005261.1 + 127344 0.68 0.461019
Target:  5'- gGAGCGGCggggcgcugggcCCGCGugGCuaggaugucguuGGcGGCgGCg -3'
miRNA:   3'- gCUCGCCGa-----------GGCGCugCG------------CC-CCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 126964 0.7 0.32041
Target:  5'- gGGGCGGCagCGCGaaccGCGCGGGGg--- -3'
miRNA:   3'- gCUCGCCGagGCGC----UGCGCCCCgacg -5'
23804 3' -63.8 NC_005261.1 + 125967 0.66 0.526458
Target:  5'- -cAGCacuucGCUCgGCGACG-GGGGCcGCa -3'
miRNA:   3'- gcUCGc----CGAGgCGCUGCgCCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 125922 0.68 0.427409
Target:  5'- gGGGCucgccacgcgcacGGUagCCGCuGGCGCGGGGUcGCa -3'
miRNA:   3'- gCUCG-------------CCGa-GGCG-CUGCGCCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 125809 0.7 0.3345
Target:  5'- uGGGCcggGGCcgCCGCGA-GCGGGGCcggaccgggcuuUGCa -3'
miRNA:   3'- gCUCG---CCGa-GGCGCUgCGCCCCG------------ACG- -5'
23804 3' -63.8 NC_005261.1 + 125395 0.67 0.480583
Target:  5'- gCGuGCGGUacguUCCggaGCGGCGCG-GGCgGCg -3'
miRNA:   3'- -GCuCGCCG----AGG---CGCUGCGCcCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 125314 0.67 0.484184
Target:  5'- gCGGGC-GCUCCGCGgccucggcguccgcaGCGCGcaGGGCguccaGCa -3'
miRNA:   3'- -GCUCGcCGAGGCGC---------------UGCGC--CCCGa----CG- -5'
23804 3' -63.8 NC_005261.1 + 124626 0.68 0.46278
Target:  5'- -cAGCGGCaUCUGCGcgaagaagGCGCuGGGCcGCa -3'
miRNA:   3'- gcUCGCCG-AGGCGC--------UGCGcCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 123167 0.67 0.489609
Target:  5'- gGGGCgGGCg-CGCgGGCGUGGuGGCUGg -3'
miRNA:   3'- gCUCG-CCGagGCG-CUGCGCC-CCGACg -5'
23804 3' -63.8 NC_005261.1 + 121808 0.67 0.471639
Target:  5'- gGGGCgcguggcugGGCUCUGCGGgccgcCGCGGcGGC-GCa -3'
miRNA:   3'- gCUCG---------CCGAGGCGCU-----GCGCC-CCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.