miRNA display CGI


Results 41 - 60 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23804 3' -63.8 NC_005261.1 + 12769 0.66 0.526458
Target:  5'- -aGGCGGCg--GUGGCGgGGGGCUcgucgGCg -3'
miRNA:   3'- gcUCGCCGaggCGCUGCgCCCCGA-----CG- -5'
23804 3' -63.8 NC_005261.1 + 13016 0.69 0.395295
Target:  5'- cCGAGCGcGCcCCccagcaccacgaGCcagGGCGCGGGGCcGCg -3'
miRNA:   3'- -GCUCGC-CGaGG------------CG---CUGCGCCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 13112 0.71 0.274628
Target:  5'- uCGGG-GGCgUCgGCGGcCGCGGGGC-GCg -3'
miRNA:   3'- -GCUCgCCG-AGgCGCU-GCGCCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 13674 0.7 0.327399
Target:  5'- gGGGgGGCgcggggCgCGCgGGCGUGGGGCgggGCg -3'
miRNA:   3'- gCUCgCCGa-----G-GCG-CUGCGCCCCGa--CG- -5'
23804 3' -63.8 NC_005261.1 + 14018 0.72 0.245239
Target:  5'- -cGGUGaGCUCUGCGAUggccaGCGGGGCcaUGCg -3'
miRNA:   3'- gcUCGC-CGAGGCGCUG-----CGCCCCG--ACG- -5'
23804 3' -63.8 NC_005261.1 + 14263 0.67 0.471639
Target:  5'- cCGGuGuCGGCUUCGgGGC-UGGGGCUGg -3'
miRNA:   3'- -GCU-C-GCCGAGGCgCUGcGCCCCGACg -5'
23804 3' -63.8 NC_005261.1 + 14350 0.76 0.135311
Target:  5'- aGcAGCGGCagcagCCGCGGC-CGGGGCgGCg -3'
miRNA:   3'- gC-UCGCCGa----GGCGCUGcGCCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 14752 0.71 0.300118
Target:  5'- gCGAuCGGCgccgcgCCGCGACaGgGGGGCcGCc -3'
miRNA:   3'- -GCUcGCCGa-----GGCGCUG-CgCCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 15274 0.68 0.419861
Target:  5'- -cGGCGGCgccgCCGgGGCGCGcGGUcGCg -3'
miRNA:   3'- gcUCGCCGa---GGCgCUGCGCcCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 15533 0.73 0.208533
Target:  5'- gGAGCGGaaggcgucgUUCGCGACGCGcGGGCaggagGCg -3'
miRNA:   3'- gCUCGCCg--------AGGCGCUGCGC-CCCGa----CG- -5'
23804 3' -63.8 NC_005261.1 + 16239 0.71 0.300118
Target:  5'- gGGGCGGUcgacgUCCGCG-C-CGGGGCcGCc -3'
miRNA:   3'- gCUCGCCG-----AGGCGCuGcGCCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 17658 0.67 0.498713
Target:  5'- uGAGgaUGGCgcgCCGCGugGCGGGaucaGUggGCa -3'
miRNA:   3'- gCUC--GCCGa--GGCGCugCGCCC----CGa-CG- -5'
23804 3' -63.8 NC_005261.1 + 20131 0.75 0.172484
Target:  5'- cCGcAGCGGCUCCGCGAgCGCucaGGCcGCg -3'
miRNA:   3'- -GC-UCGCCGAGGCGCU-GCGcc-CCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 20171 0.67 0.484184
Target:  5'- uGcuCGGCUCCGCcGCaaggcagcaggcgaaGCGGGGCcGCc -3'
miRNA:   3'- gCucGCCGAGGCGcUG---------------CGCCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 20538 0.66 0.545274
Target:  5'- cCGAcCGcGCUCUGCugGACGUGGcGGCggGCu -3'
miRNA:   3'- -GCUcGC-CGAGGCG--CUGCGCC-CCGa-CG- -5'
23804 3' -63.8 NC_005261.1 + 20571 0.7 0.327399
Target:  5'- gCGcAGCGGCgCCgGCGGCGCGGGug-GCc -3'
miRNA:   3'- -GC-UCGCCGaGG-CGCUGCGCCCcgaCG- -5'
23804 3' -63.8 NC_005261.1 + 20855 0.68 0.454009
Target:  5'- gCGuGGCGGCUCuUGCGcCGCGGGcCgGCc -3'
miRNA:   3'- -GC-UCGCCGAG-GCGCuGCGCCCcGaCG- -5'
23804 3' -63.8 NC_005261.1 + 21772 0.78 0.100483
Target:  5'- cCGGGCGaGCcgCCGCGGCGCGGGccGCcGCa -3'
miRNA:   3'- -GCUCGC-CGa-GGCGCUGCGCCC--CGaCG- -5'
23804 3' -63.8 NC_005261.1 + 21812 0.66 0.544328
Target:  5'- cCGGGCcgGGC-CCGCGGCGgGcgcgcgugcgggcGGGCUcGCc -3'
miRNA:   3'- -GCUCG--CCGaGGCGCUGCgC-------------CCCGA-CG- -5'
23804 3' -63.8 NC_005261.1 + 22045 0.66 0.535837
Target:  5'- -cAGgGGCUCCgGCGGgGUucaGGGGCUccgGCg -3'
miRNA:   3'- gcUCgCCGAGG-CGCUgCG---CCCCGA---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.