miRNA display CGI


Results 41 - 60 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23804 3' -63.8 NC_005261.1 + 121637 0.71 0.30677
Target:  5'- -cGGCGGCcgCCGcCGGCgaGCGcGGGCUGUc -3'
miRNA:   3'- gcUCGCCGa-GGC-GCUG--CGC-CCCGACG- -5'
23804 3' -63.8 NC_005261.1 + 121468 0.69 0.394492
Target:  5'- gCGAGCuccucggcguaccGGCUgCCGCcacggGGCgGCGGGGCggGCa -3'
miRNA:   3'- -GCUCG-------------CCGA-GGCG-----CUG-CGCCCCGa-CG- -5'
23804 3' -63.8 NC_005261.1 + 121413 0.68 0.436743
Target:  5'- gCGA-CGGCUgCCGCcgccgcuacggGGCgGCGGGGCggGCa -3'
miRNA:   3'- -GCUcGCCGA-GGCG-----------CUG-CGCCCCGa-CG- -5'
23804 3' -63.8 NC_005261.1 + 121108 0.66 0.554763
Target:  5'- cCGuGCGGgUCCucuagGGCGCGGaGGCgcggGCg -3'
miRNA:   3'- -GCuCGCCgAGGcg---CUGCGCC-CCGa---CG- -5'
23804 3' -63.8 NC_005261.1 + 120939 0.7 0.355724
Target:  5'- cCGGGCgcgggaagguggaGGCUCgCGCccCGCGGGGC-GCg -3'
miRNA:   3'- -GCUCG-------------CCGAG-GCGcuGCGCCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 120606 0.7 0.3345
Target:  5'- --uGCGGcCUCgGCGcCGUGGGGCUccuGCu -3'
miRNA:   3'- gcuCGCC-GAGgCGCuGCGCCCCGA---CG- -5'
23804 3' -63.8 NC_005261.1 + 120403 0.71 0.313534
Target:  5'- aGAGCGGCgUCUGCGcugaGCGgccuGGGCUGg -3'
miRNA:   3'- gCUCGCCG-AGGCGCug--CGC----CCCGACg -5'
23804 3' -63.8 NC_005261.1 + 120307 0.69 0.370905
Target:  5'- aGGGCGGCgaggcugUCUGCGAgGCGc-GCUGCg -3'
miRNA:   3'- gCUCGCCG-------AGGCGCUgCGCccCGACG- -5'
23804 3' -63.8 NC_005261.1 + 119890 0.71 0.300118
Target:  5'- aGGGCguguacaccuGGCgCCGCGACGCGGGcGCcaagucGCa -3'
miRNA:   3'- gCUCG----------CCGaGGCGCUGCGCCC-CGa-----CG- -5'
23804 3' -63.8 NC_005261.1 + 119542 0.73 0.228889
Target:  5'- cCGAGCaaGGCcCCGC--CGCGGGGCcGCa -3'
miRNA:   3'- -GCUCG--CCGaGGCGcuGCGCCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 118941 0.67 0.517142
Target:  5'- cCGcGCGGCUggCCGCGGCGCacguggccaaGGucCUGCa -3'
miRNA:   3'- -GCuCGCCGA--GGCGCUGCG----------CCccGACG- -5'
23804 3' -63.8 NC_005261.1 + 118827 0.75 0.168391
Target:  5'- uGGGCGcggcacugccGCUCUGCGGCGCGgaGGGCgGCg -3'
miRNA:   3'- gCUCGC----------CGAGGCGCUGCGC--CCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 118678 0.67 0.468972
Target:  5'- aGGGCGGCgggcgcuggcgcacgCGCGGCGUGGucCUGCu -3'
miRNA:   3'- gCUCGCCGag-------------GCGCUGCGCCccGACG- -5'
23804 3' -63.8 NC_005261.1 + 118636 0.69 0.404194
Target:  5'- cCGcGGCGGCgcucugggccccgggCCGCG-CGCucGGGGCUGa -3'
miRNA:   3'- -GC-UCGCCGa--------------GGCGCuGCG--CCCCGACg -5'
23804 3' -63.8 NC_005261.1 + 118381 0.66 0.573881
Target:  5'- gCGcGCGGC-CCGaGGCGCuGGcGGCcGCg -3'
miRNA:   3'- -GCuCGCCGaGGCgCUGCG-CC-CCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 118194 0.71 0.293578
Target:  5'- gCGGGCcccGCgccugCCGCGcuGCGCGGGGC-GCu -3'
miRNA:   3'- -GCUCGc--CGa----GGCGC--UGCGCCCCGaCG- -5'
23804 3' -63.8 NC_005261.1 + 118141 0.68 0.453137
Target:  5'- uCGGcCGGCUCgCGCaGACgcuggccgucgcgGCGGGGCUuGCc -3'
miRNA:   3'- -GCUcGCCGAG-GCG-CUG-------------CGCCCCGA-CG- -5'
23804 3' -63.8 NC_005261.1 + 117910 0.72 0.25667
Target:  5'- uGAGCGGCUgCGCGggaACGaaGGccGGCUGCg -3'
miRNA:   3'- gCUCGCCGAgGCGC---UGCg-CC--CCGACG- -5'
23804 3' -63.8 NC_005261.1 + 117528 0.74 0.189758
Target:  5'- uGAGCGuGUccaCCGCGGCGCcggaGGGGCUGa -3'
miRNA:   3'- gCUCGC-CGa--GGCGCUGCG----CCCCGACg -5'
23804 3' -63.8 NC_005261.1 + 117463 0.68 0.419861
Target:  5'- gGuGCGGCaggucggCgGCGACGCGcuGCUGCg -3'
miRNA:   3'- gCuCGCCGa------GgCGCUGCGCccCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.