miRNA display CGI


Results 61 - 80 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23804 5' -54.2 NC_005261.1 + 75318 0.69 0.868513
Target:  5'- --cCGU-CggCGGCGCGCGGAGCc-- -3'
miRNA:   3'- gcuGCAuGaaGCUGCGCGCCUCGaug -5'
23804 5' -54.2 NC_005261.1 + 75471 0.66 0.941719
Target:  5'- aGGCGccgggCGGCgGCGCGGGccGCUACg -3'
miRNA:   3'- gCUGCaugaaGCUG-CGCGCCU--CGAUG- -5'
23804 5' -54.2 NC_005261.1 + 76077 0.73 0.6546
Target:  5'- gGGCGgGCUgcugcgccUCGugGCGCuGGAGCUGg -3'
miRNA:   3'- gCUGCaUGA--------AGCugCGCG-CCUCGAUg -5'
23804 5' -54.2 NC_005261.1 + 76151 0.67 0.931924
Target:  5'- uCGugGcgGCgcaCGACGcCGUGGcGCUGCa -3'
miRNA:   3'- -GCugCa-UGaa-GCUGC-GCGCCuCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 83570 0.66 0.954612
Target:  5'- gGGCGUGCccgCGGCGCccGCGGccgccAGCaGCg -3'
miRNA:   3'- gCUGCAUGaa-GCUGCG--CGCC-----UCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 85965 0.66 0.946254
Target:  5'- uGGCGUGgUcCGugauuGCGCGCucGAGCUGCg -3'
miRNA:   3'- gCUGCAUgAaGC-----UGCGCGc-CUCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 88818 0.67 0.913038
Target:  5'- gCGGCGggGCggCGGCGCGCGccggcccggcgucGGCUACc -3'
miRNA:   3'- -GCUGCa-UGaaGCUGCGCGCc------------UCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 89117 0.66 0.946254
Target:  5'- gCGugGcACUgCG-CGCGcCGGAGCaGCa -3'
miRNA:   3'- -GCugCaUGAaGCuGCGC-GCCUCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 89584 0.66 0.936943
Target:  5'- aCGGcCGU-CUaCGACGCGCGacucgacGGCUACg -3'
miRNA:   3'- -GCU-GCAuGAaGCUGCGCGCc------UCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 90426 0.69 0.868513
Target:  5'- gCGACGU---UCGACGUggGCGGGcgcgcGCUGCa -3'
miRNA:   3'- -GCUGCAugaAGCUGCG--CGCCU-----CGAUG- -5'
23804 5' -54.2 NC_005261.1 + 91257 0.69 0.845076
Target:  5'- uCGGCG-ACUUuguuaUGACG-GCGGAGCUGa -3'
miRNA:   3'- -GCUGCaUGAA-----GCUGCgCGCCUCGAUg -5'
23804 5' -54.2 NC_005261.1 + 93674 0.66 0.954612
Target:  5'- -cGCGgGCggCGGCGCcgGCGGGGCgccgGCg -3'
miRNA:   3'- gcUGCaUGaaGCUGCG--CGCCUCGa---UG- -5'
23804 5' -54.2 NC_005261.1 + 95645 0.7 0.802176
Target:  5'- gGGCGaGCg-CGACGCGCGGcGCcGCg -3'
miRNA:   3'- gCUGCaUGaaGCUGCGCGCCuCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 97670 0.68 0.903181
Target:  5'- cCGGCGU-CcgCGGgGCuuggGCGGGGCUGCc -3'
miRNA:   3'- -GCUGCAuGaaGCUgCG----CGCCUCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 98333 0.67 0.931924
Target:  5'- gCGGCGcGCcccgugUCGACGCG-GGGGCg-- -3'
miRNA:   3'- -GCUGCaUGa-----AGCUGCGCgCCUCGaug -5'
23804 5' -54.2 NC_005261.1 + 98513 0.68 0.883065
Target:  5'- cCGGCGUACgggcaGGCGCGagauccggcCGGuaGGCUGCg -3'
miRNA:   3'- -GCUGCAUGaag--CUGCGC---------GCC--UCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 98919 0.67 0.921156
Target:  5'- uCGGCGggg-UCGGCuGCGgGGGGCaGCg -3'
miRNA:   3'- -GCUGCaugaAGCUG-CGCgCCUCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 99019 0.68 0.885867
Target:  5'- gCGGCGgcGCggCGGCGCGCgcccacagcacccgcGcGAGCUGCa -3'
miRNA:   3'- -GCUGCa-UGaaGCUGCGCG---------------C-CUCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 100177 0.66 0.958441
Target:  5'- gGACGcaACgcCGugGCgGCGGGGCaGCg -3'
miRNA:   3'- gCUGCa-UGaaGCugCG-CGCCUCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 100500 0.66 0.946254
Target:  5'- gCGGCGUGCcgUCGGCguccagguagccGCGCGGcGCcaGCg -3'
miRNA:   3'- -GCUGCAUGa-AGCUG------------CGCGCCuCGa-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.