miRNA display CGI


Results 61 - 80 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23804 5' -54.2 NC_005261.1 + 55491 0.66 0.954612
Target:  5'- cCGACGcg---CGGCGCGCucuGGAGCaGCc -3'
miRNA:   3'- -GCUGCaugaaGCUGCGCG---CCUCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 54883 0.68 0.883065
Target:  5'- gGAUGaUGCgUCGGCGCGCGcGuGCcGCa -3'
miRNA:   3'- gCUGC-AUGaAGCUGCGCGC-CuCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 50992 0.67 0.909414
Target:  5'- cCGACGg----CGGCGCGUGG-GCgcgGCg -3'
miRNA:   3'- -GCUGCaugaaGCUGCGCGCCuCGa--UG- -5'
23804 5' -54.2 NC_005261.1 + 50870 0.69 0.83686
Target:  5'- uCGGCGc-CUUCGcCGCGCuGGcGCUGCu -3'
miRNA:   3'- -GCUGCauGAAGCuGCGCG-CCuCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 49914 0.69 0.868513
Target:  5'- aGACGUugUggcccgccUCGAgGCGCccgcGGAGCcGCg -3'
miRNA:   3'- gCUGCAugA--------AGCUgCGCG----CCUCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 49804 0.68 0.883065
Target:  5'- aGACGUcgcccuccGCgg-GGCGCGUGGAGUUAa -3'
miRNA:   3'- gCUGCA--------UGaagCUGCGCGCCUCGAUg -5'
23804 5' -54.2 NC_005261.1 + 49574 0.71 0.774486
Target:  5'- gGGCGUgaacacggGCUcggGGCGCGCGGcGCUGCu -3'
miRNA:   3'- gCUGCA--------UGAag-CUGCGCGCCuCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 49468 0.7 0.819866
Target:  5'- aGGCGggcGCgcaGGcCGCGCGGaAGCUGCa -3'
miRNA:   3'- gCUGCa--UGaagCU-GCGCGCC-UCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 45665 0.67 0.926662
Target:  5'- gGGCGUGa-UCaACGCGCGccccGGGCUGCu -3'
miRNA:   3'- gCUGCAUgaAGcUGCGCGC----CUCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 44423 0.72 0.675188
Target:  5'- -cGCGUACgcCGACGaCGUGGAGCgGCu -3'
miRNA:   3'- gcUGCAUGaaGCUGC-GCGCCUCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 44257 0.73 0.623602
Target:  5'- cCGACGccg--CGGCGCGCGGGGggGCg -3'
miRNA:   3'- -GCUGCaugaaGCUGCGCGCCUCgaUG- -5'
23804 5' -54.2 NC_005261.1 + 43766 0.69 0.868513
Target:  5'- uGAagGUGCUcguggggCGGCGCGCGGAGg-GCg -3'
miRNA:   3'- gCUg-CAUGAa------GCUGCGCGCCUCgaUG- -5'
23804 5' -54.2 NC_005261.1 + 42486 0.67 0.931924
Target:  5'- aGACGUuuugcGCggCGACGCGCGucGCg-- -3'
miRNA:   3'- gCUGCA-----UGaaGCUGCGCGCcuCGaug -5'
23804 5' -54.2 NC_005261.1 + 41889 0.7 0.793091
Target:  5'- gCGGCGUAC-UCGcGCaGCGUGGGGUUGg -3'
miRNA:   3'- -GCUGCAUGaAGC-UG-CGCGCCUCGAUg -5'
23804 5' -54.2 NC_005261.1 + 38947 0.79 0.328048
Target:  5'- gGGCGgGCcgCGGCGCGCGG-GCUGCg -3'
miRNA:   3'- gCUGCaUGaaGCUGCGCGCCuCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 38898 0.66 0.936943
Target:  5'- aGACGUcguccuuCUcCGGCGCGCGG-GCccGCg -3'
miRNA:   3'- gCUGCAu------GAaGCUGCGCGCCuCGa-UG- -5'
23804 5' -54.2 NC_005261.1 + 38510 0.67 0.921156
Target:  5'- gCGuCGUAUaa-GGCGCGCGcuGGCUGCg -3'
miRNA:   3'- -GCuGCAUGaagCUGCGCGCc-UCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 38204 0.73 0.632905
Target:  5'- gCGGCGUGCUgcugcucaacaccUCGcucacCGUGCGGAGCgggGCg -3'
miRNA:   3'- -GCUGCAUGA-------------AGCu----GCGCGCCUCGa--UG- -5'
23804 5' -54.2 NC_005261.1 + 37409 0.67 0.923388
Target:  5'- gGGCGUACUgggCcaaccccuacgccguGGCGCGCGG-GCUcGCc -3'
miRNA:   3'- gCUGCAUGAa--G---------------CUGCGCGCCuCGA-UG- -5'
23804 5' -54.2 NC_005261.1 + 37184 0.7 0.819866
Target:  5'- gGGCGcUGCUggCGGCGCugcugGCGGcGCUACu -3'
miRNA:   3'- gCUGC-AUGAa-GCUGCG-----CGCCuCGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.