Results 41 - 60 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23804 | 5' | -54.2 | NC_005261.1 | + | 75318 | 0.69 | 0.868513 |
Target: 5'- --cCGU-CggCGGCGCGCGGAGCc-- -3' miRNA: 3'- gcuGCAuGaaGCUGCGCGCCUCGaug -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 90426 | 0.69 | 0.868513 |
Target: 5'- gCGACGU---UCGACGUggGCGGGcgcgcGCUGCa -3' miRNA: 3'- -GCUGCAugaAGCUGCG--CGCCU-----CGAUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 132103 | 0.69 | 0.868513 |
Target: 5'- gGGCG-GCcgCGACGCGCucguGGAGCgggACg -3' miRNA: 3'- gCUGCaUGaaGCUGCGCG----CCUCGa--UG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 34022 | 0.68 | 0.87444 |
Target: 5'- uCGACGUGaucaccggcgCGGCGCGCGc-GCUGCc -3' miRNA: 3'- -GCUGCAUgaa-------GCUGCGCGCcuCGAUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 137940 | 0.68 | 0.8759 |
Target: 5'- gCGGCGgcgGCUgcggCGGCGgcUGCGGcggcGGCUGCg -3' miRNA: 3'- -GCUGCa--UGAa---GCUGC--GCGCC----UCGAUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 305 | 0.68 | 0.8759 |
Target: 5'- gCGGCGgcgGCUgcggCGGCGgcUGCGGcggcGGCUGCg -3' miRNA: 3'- -GCUGCa--UGAa---GCUGC--GCGCC----UCGAUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 108178 | 0.68 | 0.8759 |
Target: 5'- gGGCGcGCggccgCGGCuccggGCGCGaGAGCUGCg -3' miRNA: 3'- gCUGCaUGaa---GCUG-----CGCGC-CUCGAUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 257 | 0.68 | 0.8759 |
Target: 5'- gCGGCGgcgGCUgcggCGGCGgcUGCGGcggcGGCUGCg -3' miRNA: 3'- -GCUGCa--UGAa---GCUGC--GCGCC----UCGAUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 49804 | 0.68 | 0.883065 |
Target: 5'- aGACGUcgcccuccGCgg-GGCGCGUGGAGUUAa -3' miRNA: 3'- gCUGCA--------UGaagCUGCGCGCCUCGAUg -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 1449 | 0.68 | 0.883065 |
Target: 5'- gCGGCGgcGCcUCGGCGUGCGGcuccAGCaGCg -3' miRNA: 3'- -GCUGCa-UGaAGCUGCGCGCC----UCGaUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 54883 | 0.68 | 0.883065 |
Target: 5'- gGAUGaUGCgUCGGCGCGCGcGuGCcGCa -3' miRNA: 3'- gCUGC-AUGaAGCUGCGCGC-CuCGaUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 98513 | 0.68 | 0.883065 |
Target: 5'- cCGGCGUACgggcaGGCGCGagauccggcCGGuaGGCUGCg -3' miRNA: 3'- -GCUGCAUGaag--CUGCGC---------GCC--UCGAUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 99019 | 0.68 | 0.885867 |
Target: 5'- gCGGCGgcGCggCGGCGCGCgcccacagcacccgcGcGAGCUGCa -3' miRNA: 3'- -GCUGCa-UGaaGCUGCGCG---------------C-CUCGAUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 73726 | 0.68 | 0.890003 |
Target: 5'- uCGGCGUGCgcgcUUG-CGCGCGGGGgUcCg -3' miRNA: 3'- -GCUGCAUGa---AGCuGCGCGCCUCgAuG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 103497 | 0.68 | 0.890003 |
Target: 5'- aGACGUcg-UCGGCGcCGCGGAcgGCgGCg -3' miRNA: 3'- gCUGCAugaAGCUGC-GCGCCU--CGaUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 137976 | 0.68 | 0.890003 |
Target: 5'- nCGGCGgcgGCUgcggCGGCGgcUGCGGcggcGGCUGCg -3' miRNA: 3'- -GCUGCa--UGAa---GCUGC--GCGCC----UCGAUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 118584 | 0.68 | 0.890003 |
Target: 5'- gCGGCGcGCgcCGcCGcCGCGGAGCUcGCg -3' miRNA: 3'- -GCUGCaUGaaGCuGC-GCGCCUCGA-UG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 69454 | 0.68 | 0.896709 |
Target: 5'- gGACGaGCUgCGGCGCGuCGaGGGCcACa -3' miRNA: 3'- gCUGCaUGAaGCUGCGC-GC-CUCGaUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 74878 | 0.68 | 0.896709 |
Target: 5'- gGACGcgGCggCGGCG-GCGGAGUcgGCg -3' miRNA: 3'- gCUGCa-UGaaGCUGCgCGCCUCGa-UG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 62283 | 0.68 | 0.896709 |
Target: 5'- uGugGUACaucacgUCGGCGcCGCGcGGGCgcgcgGCg -3' miRNA: 3'- gCugCAUGa-----AGCUGC-GCGC-CUCGa----UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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