Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23805 | 5' | -54.3 | NC_005261.1 | + | 135277 | 0.67 | 0.881662 |
Target: 5'- -gCGGCCugugcagaACGGCgGgUUCCGCGCGAc -3' miRNA: 3'- aaGCUGG--------UGUCGaUgAAGGUGCGCUa -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 62047 | 0.67 | 0.873501 |
Target: 5'- cUCGGCCggcuccaggcgcaGCAGCUGCcccgCCucGCGCGAg -3' miRNA: 3'- aAGCUGG-------------UGUCGAUGaa--GG--UGCGCUa -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 107907 | 0.67 | 0.866614 |
Target: 5'- -gCGGCCGCGGCcucgGCcacgagugCCGCGCGGa -3' miRNA: 3'- aaGCUGGUGUCGa---UGaa------GGUGCGCUa -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 35974 | 0.67 | 0.866614 |
Target: 5'- cUCGGCCGCuguAGCggcgGCggcUCCugGCGGc -3' miRNA: 3'- aAGCUGGUG---UCGa---UGa--AGGugCGCUa -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 74685 | 0.67 | 0.866614 |
Target: 5'- -gCGACCgcGCGGgaGCUggccgCCGCGCGGg -3' miRNA: 3'- aaGCUGG--UGUCgaUGAa----GGUGCGCUa -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 28222 | 0.67 | 0.866614 |
Target: 5'- -gCGGCCcCAGCUACcccccggCgCGCGCGAUa -3' miRNA: 3'- aaGCUGGuGUCGAUGaa-----G-GUGCGCUA- -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 42640 | 0.67 | 0.858746 |
Target: 5'- cUCGGCCGCcGCgg---CCGCGCGGa -3' miRNA: 3'- aAGCUGGUGuCGaugaaGGUGCGCUa -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 10510 | 0.67 | 0.858746 |
Target: 5'- -gCGGCCGCcGCUGCgggCCcCGCGGc -3' miRNA: 3'- aaGCUGGUGuCGAUGaa-GGuGCGCUa -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 58028 | 0.68 | 0.850658 |
Target: 5'- -gCGGCgGCAGCUccagggagcGCggCCGCGUGAUg -3' miRNA: 3'- aaGCUGgUGUCGA---------UGaaGGUGCGCUA- -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 134568 | 0.68 | 0.83385 |
Target: 5'- -gCGgcGCCGCGGCUGCgcagggcgggCCugGCGAg -3' miRNA: 3'- aaGC--UGGUGUCGAUGaa--------GGugCGCUa -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 30257 | 0.68 | 0.83385 |
Target: 5'- cUCGACgCGCGGCgcgGCggcCCGCGCGc- -3' miRNA: 3'- aAGCUG-GUGUCGa--UGaa-GGUGCGCua -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 54702 | 0.68 | 0.832989 |
Target: 5'- --aGGCCGCAGCUcgcguuuagaaacACgaCCGCGCGGc -3' miRNA: 3'- aagCUGGUGUCGA-------------UGaaGGUGCGCUa -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 109791 | 0.68 | 0.828651 |
Target: 5'- -cCGGCCGCuGCUgcgacggccggcgccGCUUCCGcCGCGGc -3' miRNA: 3'- aaGCUGGUGuCGA---------------UGAAGGU-GCGCUa -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 138220 | 0.68 | 0.825146 |
Target: 5'- --gGACgGCGGCUcgGCcgCCGCGCGGUg -3' miRNA: 3'- aagCUGgUGUCGA--UGaaGGUGCGCUA- -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 549 | 0.68 | 0.825146 |
Target: 5'- --gGACgGCGGCUcgGCcgCCGCGCGGUg -3' miRNA: 3'- aagCUGgUGUCGA--UGaaGGUGCGCUA- -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 102632 | 0.69 | 0.778975 |
Target: 5'- cUCGGCCGCGGCUucgUCCGCGg--- -3' miRNA: 3'- aAGCUGGUGUCGAugaAGGUGCgcua -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 104113 | 0.69 | 0.769277 |
Target: 5'- -gCGACCGCAGCcGCgcggUUCGcCGCGAg -3' miRNA: 3'- aaGCUGGUGUCGaUGa---AGGU-GCGCUa -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 88438 | 0.7 | 0.729272 |
Target: 5'- --gGGCCACcGCUGCUggccgcgCCGCGUGAg -3' miRNA: 3'- aagCUGGUGuCGAUGAa------GGUGCGCUa -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 21739 | 0.71 | 0.698283 |
Target: 5'- aUCGACaCGCGGCUGCUgcgCCuggaGCGCGc- -3' miRNA: 3'- aAGCUG-GUGUCGAUGAa--GG----UGCGCua -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 105231 | 0.71 | 0.692012 |
Target: 5'- -gCGGCCGCGGCcgugaucugcggcgGCaUCCGCGCGAc -3' miRNA: 3'- aaGCUGGUGUCGa-------------UGaAGGUGCGCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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