miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23806 3' -57.3 NC_005261.1 + 131664 0.66 0.808784
Target:  5'- -cGCACCgUCUgCGAGgGUgcgaccgcccUGCGCGCg -3'
miRNA:   3'- uuCGUGG-AGAaGCUCgCG----------ACGUGCGa -5'
23806 3' -57.3 NC_005261.1 + 42217 0.66 0.808784
Target:  5'- cGGGCGCCcCgccgCGAGCuccGCcGCGCGCa -3'
miRNA:   3'- -UUCGUGGaGaa--GCUCG---CGaCGUGCGa -5'
23806 3' -57.3 NC_005261.1 + 75974 0.66 0.807885
Target:  5'- -cGCAgCUCUUccCGGGCGCgGCcgcccucGCGCUg -3'
miRNA:   3'- uuCGUgGAGAA--GCUCGCGaCG-------UGCGA- -5'
23806 3' -57.3 NC_005261.1 + 46795 0.66 0.79973
Target:  5'- cGGGCGCC-CgUCGcGGCGCgcgcggaugGCGCGCg -3'
miRNA:   3'- -UUCGUGGaGaAGC-UCGCGa--------CGUGCGa -5'
23806 3' -57.3 NC_005261.1 + 104307 0.66 0.79973
Target:  5'- -cGCGCgCUCaaaGAGCGCgcggacGCGCGCg -3'
miRNA:   3'- uuCGUG-GAGaagCUCGCGa-----CGUGCGa -5'
23806 3' -57.3 NC_005261.1 + 29679 0.66 0.79973
Target:  5'- -cGCGCUg---UGGGCGCUGC-CGCa -3'
miRNA:   3'- uuCGUGGagaaGCUCGCGACGuGCGa -5'
23806 3' -57.3 NC_005261.1 + 118300 0.66 0.79973
Target:  5'- cGGGCACCggggcgcaCUUCcgcaccGCGCUGCugGCc -3'
miRNA:   3'- -UUCGUGGa-------GAAGcu----CGCGACGugCGa -5'
23806 3' -57.3 NC_005261.1 + 68985 0.66 0.790518
Target:  5'- cGGC-CCUUUUCGGGcCGCgcggGCGcCGCg -3'
miRNA:   3'- uUCGuGGAGAAGCUC-GCGa---CGU-GCGa -5'
23806 3' -57.3 NC_005261.1 + 28146 0.66 0.789588
Target:  5'- cGGCGCCcccaUCUccgccgcUCGGGCGCcccccgucucgcUGCGCGCc -3'
miRNA:   3'- uUCGUGG----AGA-------AGCUCGCG------------ACGUGCGa -5'
23806 3' -57.3 NC_005261.1 + 123960 0.66 0.787725
Target:  5'- cAGCGCCcgCUccgCGAGCGCUacaaacagcgucagGUACGCc -3'
miRNA:   3'- uUCGUGGa-GAa--GCUCGCGA--------------CGUGCGa -5'
23806 3' -57.3 NC_005261.1 + 131455 0.66 0.7821
Target:  5'- -cGCGCCUCg-CGGGCGCcucccgccuccgcgaGCGCGCc -3'
miRNA:   3'- uuCGUGGAGaaGCUCGCGa--------------CGUGCGa -5'
23806 3' -57.3 NC_005261.1 + 1453 0.66 0.781157
Target:  5'- cGGCGCCUCggCGugcggcuccagcAGCGCgGcCGCGCa -3'
miRNA:   3'- uUCGUGGAGaaGC------------UCGCGaC-GUGCGa -5'
23806 3' -57.3 NC_005261.1 + 104565 0.66 0.781157
Target:  5'- cAGGuCGCCcagCgcUGAGgGCUGCGCGCg -3'
miRNA:   3'- -UUC-GUGGa--GaaGCUCgCGACGUGCGa -5'
23806 3' -57.3 NC_005261.1 + 61468 0.66 0.781157
Target:  5'- gGAGUACCUUUUCGcGCaGCUGCAg--- -3'
miRNA:   3'- -UUCGUGGAGAAGCuCG-CGACGUgcga -5'
23806 3' -57.3 NC_005261.1 + 109315 0.66 0.781157
Target:  5'- -cGCccugGCCUCcgCGAGCGCgGC-CGCg -3'
miRNA:   3'- uuCG----UGGAGaaGCUCGCGaCGuGCGa -5'
23806 3' -57.3 NC_005261.1 + 20134 0.66 0.781157
Target:  5'- cAGCGgCUCcgCGAGCGCUcagGC-CGCg -3'
miRNA:   3'- uUCGUgGAGaaGCUCGCGA---CGuGCGa -5'
23806 3' -57.3 NC_005261.1 + 18254 0.66 0.781157
Target:  5'- cGGCACCUaCUgUGAGCgugacGCUGCcCGCg -3'
miRNA:   3'- uUCGUGGA-GAaGCUCG-----CGACGuGCGa -5'
23806 3' -57.3 NC_005261.1 + 101239 0.66 0.771659
Target:  5'- uGGCGCCUCagCucGCGCaGCGCGUc -3'
miRNA:   3'- uUCGUGGAGaaGcuCGCGaCGUGCGa -5'
23806 3' -57.3 NC_005261.1 + 52671 0.66 0.771659
Target:  5'- -cGCACUUCgagCGGGCcCUGCuCGCg -3'
miRNA:   3'- uuCGUGGAGaa-GCUCGcGACGuGCGa -5'
23806 3' -57.3 NC_005261.1 + 93137 0.66 0.771659
Target:  5'- cAGCACCUCggggucCGucuGCaGCUcGCACGCg -3'
miRNA:   3'- uUCGUGGAGaa----GCu--CG-CGA-CGUGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.