miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23806 5' -54.8 NC_005261.1 + 35053 0.66 0.932234
Target:  5'- ---aCGGCGGCCgcgCGGCGgcggUCUCCGCg -3'
miRNA:   3'- gcucGCUGUCGGa--GUUGUa---GGAGGUG- -5'
23806 5' -54.8 NC_005261.1 + 33384 0.66 0.932234
Target:  5'- gCGGGCcgccGCAGCCgccgccgCAGCcgCCgCCGCa -3'
miRNA:   3'- -GCUCGc---UGUCGGa------GUUGuaGGaGGUG- -5'
23806 5' -54.8 NC_005261.1 + 121276 0.66 0.932234
Target:  5'- gGGGCGGCcgccccGGCCUCGcucuCGUCC-CCGu -3'
miRNA:   3'- gCUCGCUG------UCGGAGUu---GUAGGaGGUg -5'
23806 5' -54.8 NC_005261.1 + 102954 0.66 0.932234
Target:  5'- -cGGCGGCGGCCgcgggCGccGCGggCUCCGCc -3'
miRNA:   3'- gcUCGCUGUCGGa----GU--UGUagGAGGUG- -5'
23806 5' -54.8 NC_005261.1 + 13304 0.66 0.932234
Target:  5'- uGuGCGACgggGGCCUCGuacGCAgcgcCCUCgCACu -3'
miRNA:   3'- gCuCGCUG---UCGGAGU---UGUa---GGAG-GUG- -5'
23806 5' -54.8 NC_005261.1 + 638 0.66 0.932234
Target:  5'- -uGGCGGCGGCCgccagCGccGCGUCC-CCGg -3'
miRNA:   3'- gcUCGCUGUCGGa----GU--UGUAGGaGGUg -5'
23806 5' -54.8 NC_005261.1 + 83931 0.66 0.932234
Target:  5'- cCGAGCGcGCGGCCgccaUCGcUGUCC-CCGCc -3'
miRNA:   3'- -GCUCGC-UGUCGG----AGUuGUAGGaGGUG- -5'
23806 5' -54.8 NC_005261.1 + 32495 0.66 0.932234
Target:  5'- -cGGCGACGGCggcaUCGGCgggggGUCCgcgCCGCg -3'
miRNA:   3'- gcUCGCUGUCGg---AGUUG-----UAGGa--GGUG- -5'
23806 5' -54.8 NC_005261.1 + 82070 0.66 0.932234
Target:  5'- cCGGGuCGACGGCgugccgCAGCAgggCCUCCu- -3'
miRNA:   3'- -GCUC-GCUGUCGga----GUUGUa--GGAGGug -5'
23806 5' -54.8 NC_005261.1 + 81617 0.66 0.92694
Target:  5'- --cGCGGCGGgUUCAGCA-CCgCCGCg -3'
miRNA:   3'- gcuCGCUGUCgGAGUUGUaGGaGGUG- -5'
23806 5' -54.8 NC_005261.1 + 50784 0.66 0.92694
Target:  5'- cCGcGGCGGCGGCCgcccCGGCG-CCgCCGCc -3'
miRNA:   3'- -GC-UCGCUGUCGGa---GUUGUaGGaGGUG- -5'
23806 5' -54.8 NC_005261.1 + 49256 0.66 0.92694
Target:  5'- --cGCGGCGGCgUCGGCGcgcaCgUCCGCg -3'
miRNA:   3'- gcuCGCUGUCGgAGUUGUa---GgAGGUG- -5'
23806 5' -54.8 NC_005261.1 + 128472 0.66 0.92694
Target:  5'- aCGAGCaGCgAGCg-CGACAUCCUCguCg -3'
miRNA:   3'- -GCUCGcUG-UCGgaGUUGUAGGAGguG- -5'
23806 5' -54.8 NC_005261.1 + 126213 0.66 0.921398
Target:  5'- -cAGCGGCAGCCcCAGC-UCC-CgACg -3'
miRNA:   3'- gcUCGCUGUCGGaGUUGuAGGaGgUG- -5'
23806 5' -54.8 NC_005261.1 + 103518 0.66 0.921398
Target:  5'- -cGGCGGCGuCCgCGGCAUCCgCCGCc -3'
miRNA:   3'- gcUCGCUGUcGGaGUUGUAGGaGGUG- -5'
23806 5' -54.8 NC_005261.1 + 84376 0.66 0.921398
Target:  5'- gCGGGCu-CGGCCUCGGCcgCCgCCuCg -3'
miRNA:   3'- -GCUCGcuGUCGGAGUUGuaGGaGGuG- -5'
23806 5' -54.8 NC_005261.1 + 130469 0.66 0.921398
Target:  5'- cCGAGCGGCucgcggcguGCCUCGGCGgcgagggCC-CCGa -3'
miRNA:   3'- -GCUCGCUGu--------CGGAGUUGUa------GGaGGUg -5'
23806 5' -54.8 NC_005261.1 + 2649 0.66 0.915608
Target:  5'- gCGGGCgGGCAGCggCGGC-UCCcgCCGCg -3'
miRNA:   3'- -GCUCG-CUGUCGgaGUUGuAGGa-GGUG- -5'
23806 5' -54.8 NC_005261.1 + 42670 0.66 0.915608
Target:  5'- -aAGCGGCGGCCgggCcGCcgCCggcagCCGCg -3'
miRNA:   3'- gcUCGCUGUCGGa--GuUGuaGGa----GGUG- -5'
23806 5' -54.8 NC_005261.1 + 15363 0.66 0.915608
Target:  5'- aCGuccCGGCGGCgCUCGGCGcCCUCgGCg -3'
miRNA:   3'- -GCuc-GCUGUCG-GAGUUGUaGGAGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.