miRNA display CGI


Results 21 - 38 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23807 3' -56.3 NC_005261.1 + 88469 0.7 0.663319
Target:  5'- gUGUGGGcGGGCCgUGccGCGccgGAGCGCg -3'
miRNA:   3'- uGCACCU-UCCGGgACa-UGCa--CUCGCG- -5'
23807 3' -56.3 NC_005261.1 + 89771 0.69 0.723906
Target:  5'- cCGUGGccgagGAGGCCCU--GCGgGAGCGg -3'
miRNA:   3'- uGCACC-----UUCCGGGAcaUGCaCUCGCg -5'
23807 3' -56.3 NC_005261.1 + 94754 0.66 0.894468
Target:  5'- gACGUGGAGaucuGGUUCgaggACGUG-GCGCc -3'
miRNA:   3'- -UGCACCUU----CCGGGaca-UGCACuCGCG- -5'
23807 3' -56.3 NC_005261.1 + 97359 0.69 0.723906
Target:  5'- cCGUGGGGucuacGGCCCgg-GCGUGucgccGCGCg -3'
miRNA:   3'- uGCACCUU-----CCGGGacaUGCACu----CGCG- -5'
23807 3' -56.3 NC_005261.1 + 97482 0.67 0.834513
Target:  5'- cCGUcgGGggGGCCC--UugG-GGGCGCc -3'
miRNA:   3'- uGCA--CCuuCCGGGacAugCaCUCGCG- -5'
23807 3' -56.3 NC_005261.1 + 98364 0.7 0.674551
Target:  5'- -gGUGGGcgcGGGCUCUGgcgggcgcaauaccgGCGUGGGgGCg -3'
miRNA:   3'- ugCACCU---UCCGGGACa--------------UGCACUCgCG- -5'
23807 3' -56.3 NC_005261.1 + 100290 0.67 0.834513
Target:  5'- aGCGgcaGAAGGCCCcaaaGUccGCGUcgcGGGCGCg -3'
miRNA:   3'- -UGCac-CUUCCGGGa---CA--UGCA---CUCGCG- -5'
23807 3' -56.3 NC_005261.1 + 105578 0.7 0.653081
Target:  5'- cGCGUaGAGGGCCUcgGggcGCGUGcGCGCg -3'
miRNA:   3'- -UGCAcCUUCCGGGa-Ca--UGCACuCGCG- -5'
23807 3' -56.3 NC_005261.1 + 111092 0.68 0.808796
Target:  5'- gUGUGGggGGCCggggaCUGggUG-GAGUGCu -3'
miRNA:   3'- uGCACCuuCCGG-----GACauGCaCUCGCG- -5'
23807 3' -56.3 NC_005261.1 + 115585 0.66 0.887732
Target:  5'- gGCGaGGAAcuGGCC--GUACGUGAGCcccaGCg -3'
miRNA:   3'- -UGCaCCUU--CCGGgaCAUGCACUCG----CG- -5'
23807 3' -56.3 NC_005261.1 + 118961 0.69 0.713953
Target:  5'- cACGUGGccAAGGUCCUGcACGcc-GCGCu -3'
miRNA:   3'- -UGCACC--UUCCGGGACaUGCacuCGCG- -5'
23807 3' -56.3 NC_005261.1 + 120619 0.75 0.39844
Target:  5'- cCGUGGGGcuccugcugguggcGGCCCUGUGCcUGcGGCGCa -3'
miRNA:   3'- uGCACCUU--------------CCGGGACAUGcAC-UCGCG- -5'
23807 3' -56.3 NC_005261.1 + 121812 0.66 0.894468
Target:  5'- cGCGUGGcuGGGCUCUGcgggccgccGCGgcGGCGCa -3'
miRNA:   3'- -UGCACCu-UCCGGGACa--------UGCacUCGCG- -5'
23807 3' -56.3 NC_005261.1 + 122638 0.76 0.375839
Target:  5'- aGCGc--GAGGCCCggcgcgcGUACGUGGGCGCg -3'
miRNA:   3'- -UGCaccUUCCGGGa------CAUGCACUCGCG- -5'
23807 3' -56.3 NC_005261.1 + 123655 0.66 0.873583
Target:  5'- cACGcccaGGAAGGCCgCUGUcaucucgcgcACGUcccGGCGCu -3'
miRNA:   3'- -UGCa---CCUUCCGG-GACA----------UGCAc--UCGCG- -5'
23807 3' -56.3 NC_005261.1 + 124188 0.68 0.808796
Target:  5'- cGCGUGGggGGacgcgUCCgGUgGCGUGAacuGCGUg -3'
miRNA:   3'- -UGCACCuuCC-----GGGaCA-UGCACU---CGCG- -5'
23807 3' -56.3 NC_005261.1 + 130482 0.71 0.6223
Target:  5'- gGCGUGccucggcggcGAGGGCCCcGacgACGUG-GCGCa -3'
miRNA:   3'- -UGCAC----------CUUCCGGGaCa--UGCACuCGCG- -5'
23807 3' -56.3 NC_005261.1 + 135081 0.67 0.826115
Target:  5'- gGCGgcgGGcucgcGGCCCg--GCGgcgGAGCGCg -3'
miRNA:   3'- -UGCa--CCuu---CCGGGacaUGCa--CUCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.